Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02190 and RS_RS02195 are separated by 683 nucleotides RS_RS02195 and RS_RS02200 are separated by 133 nucleotides RS_RS02200 and RS_RS02205 are separated by 21 nucleotides
RS_RS02190: RS_RS02190 - AMP-binding protein, at 468,951 to 470,666
_RS02190
RS_RS02195: RS_RS02195 - hypothetical protein, at 471,350 to 472,630
_RS02195
RS_RS02200: RS_RS02200 - hypothetical protein, at 472,764 to 473,192
_RS02200
RS_RS02205: RS_RS02205 - peptidase C39, at 473,214 to 473,918
_RS02205
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2 at 470.442 kb on + strand, within RS_RS02190 at 470.538 kb on + strand at 470.538 kb on + strand at 470.539 kb on - strand at 470.948 kb on + strand at 470.948 kb on + strand at 470.948 kb on + strand at 470.948 kb on + strand at 470.979 kb on + strand at 470.979 kb on + strand at 470.979 kb on + strand at 471.105 kb on + strand at 471.150 kb on + strand at 471.150 kb on + strand at 471.150 kb on + strand at 471.151 kb on - strand at 471.151 kb on - strand at 471.151 kb on - strand at 471.151 kb on - strand at 471.641 kb on - strand, within RS_RS02195 at 471.797 kb on + strand, within RS_RS02195 at 471.803 kb on + strand, within RS_RS02195 at 472.628 kb on + strand at 472.998 kb on + strand, within RS_RS02200 at 473.437 kb on - strand, within RS_RS02205 at 473.484 kb on + strand, within RS_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 470,442 + RS_RS02190 0.87 +0.3 470,538 + -1.1 470,538 + -0.6 470,539 - -0.1 470,948 + +0.1 470,948 + +0.6 470,948 + +0.7 470,948 + +1.5 470,979 + -1.7 470,979 + +0.9 470,979 + -1.1 471,105 + +0.2 471,150 + +0.0 471,150 + -0.4 471,150 + -0.1 471,151 - -0.2 471,151 - -0.8 471,151 - -0.3 471,151 - +0.4 471,641 - RS_RS02195 0.23 -1.2 471,797 + RS_RS02195 0.35 -0.1 471,803 + RS_RS02195 0.35 +0.2 472,628 + +0.3 472,998 + RS_RS02200 0.55 -1.9 473,437 - RS_RS02205 0.32 +0.3 473,484 + RS_RS02205 0.38 +1.8
Or see this region's nucleotide sequence