Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00775 and RS_RS00780 are separated by 12 nucleotides RS_RS00780 and RS_RS00785 are separated by 41 nucleotides RS_RS00785 and RS_RS00790 are separated by 140 nucleotides
RS_RS00775: RS_RS00775 - diguanylate cyclase, at 177,277 to 177,669
_RS00775
RS_RS00780: RS_RS00780 - arginase, at 177,682 to 178,611
_RS00780
RS_RS00785: RS_RS00785 - ornithine--oxo-acid transaminase, at 178,653 to 179,879
_RS00785
RS_RS00790: RS_RS00790 - LysR family transcriptional regulator, at 180,020 to 180,946
_RS00790
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 177.698 kb on + strand at 177.698 kb on + strand at 177.794 kb on + strand, within RS_RS00780 at 177.794 kb on + strand, within RS_RS00780 at 178.080 kb on - strand, within RS_RS00780 at 178.080 kb on - strand, within RS_RS00780 at 178.080 kb on - strand, within RS_RS00780 at 178.080 kb on - strand, within RS_RS00780 at 178.131 kb on + strand, within RS_RS00780 at 178.340 kb on - strand, within RS_RS00780 at 178.340 kb on - strand, within RS_RS00780 at 178.768 kb on + strand at 178.769 kb on - strand at 178.769 kb on - strand at 178.769 kb on - strand at 178.785 kb on + strand, within RS_RS00785 at 179.404 kb on + strand, within RS_RS00785 at 179.405 kb on - strand, within RS_RS00785 at 179.405 kb on - strand, within RS_RS00785 at 179.405 kb on - strand, within RS_RS00785 at 179.749 kb on + strand, within RS_RS00785 at 179.819 kb on - strand at 179.852 kb on - strand at 179.852 kb on - strand at 180.042 kb on - strand at 180.050 kb on - strand at 180.128 kb on + strand, within RS_RS00790 at 180.298 kb on - strand, within RS_RS00790 at 180.521 kb on + strand, within RS_RS00790 at 180.521 kb on + strand, within RS_RS00790 at 180.521 kb on + strand, within RS_RS00790 at 180.620 kb on + strand, within RS_RS00790 at 180.621 kb on - strand, within RS_RS00790 at 180.641 kb on + strand, within RS_RS00790 at 180.641 kb on + strand, within RS_RS00790 at 180.642 kb on - strand, within RS_RS00790
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 177,698 + -0.5 177,698 + +1.4 177,794 + RS_RS00780 0.12 -0.3 177,794 + RS_RS00780 0.12 -0.2 178,080 - RS_RS00780 0.43 +0.7 178,080 - RS_RS00780 0.43 +1.2 178,080 - RS_RS00780 0.43 -2.6 178,080 - RS_RS00780 0.43 +1.6 178,131 + RS_RS00780 0.48 -0.1 178,340 - RS_RS00780 0.71 -0.5 178,340 - RS_RS00780 0.71 -0.7 178,768 + -1.0 178,769 - -0.3 178,769 - +0.2 178,769 - +2.6 178,785 + RS_RS00785 0.11 -1.0 179,404 + RS_RS00785 0.61 -1.1 179,405 - RS_RS00785 0.61 +2.6 179,405 - RS_RS00785 0.61 +0.8 179,405 - RS_RS00785 0.61 +0.6 179,749 + RS_RS00785 0.89 -0.8 179,819 - -1.4 179,852 - -0.8 179,852 - +2.6 180,042 - -0.5 180,050 - +2.6 180,128 + RS_RS00790 0.12 +0.1 180,298 - RS_RS00790 0.30 +3.6 180,521 + RS_RS00790 0.54 -0.7 180,521 + RS_RS00790 0.54 -1.4 180,521 + RS_RS00790 0.54 +2.6 180,620 + RS_RS00790 0.65 +4.7 180,621 - RS_RS00790 0.65 +0.1 180,641 + RS_RS00790 0.67 +0.5 180,641 + RS_RS00790 0.67 +2.6 180,642 - RS_RS00790 0.67 +0.7
Or see this region's nucleotide sequence