Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00765 and RS_RS00770 are separated by 17 nucleotides RS_RS00770 and RS_RS00775 are separated by 16 nucleotides RS_RS00775 and RS_RS00780 are separated by 12 nucleotides RS_RS00780 and RS_RS00785 are separated by 41 nucleotides
RS_RS00765: RS_RS00765 - class I SAM-dependent methyltransferase, at 175,246 to 176,439
_RS00765
RS_RS00770: RS_RS00770 - short chain dehydrogenase, at 176,457 to 177,260
_RS00770
RS_RS00775: RS_RS00775 - diguanylate cyclase, at 177,277 to 177,669
_RS00775
RS_RS00780: RS_RS00780 - arginase, at 177,682 to 178,611
_RS00780
RS_RS00785: RS_RS00785 - ornithine--oxo-acid transaminase, at 178,653 to 179,879
_RS00785
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.450 kb on + strand at 176.451 kb on - strand at 176.485 kb on + strand at 176.486 kb on - strand at 176.763 kb on + strand, within RS_RS00770 at 176.764 kb on - strand, within RS_RS00770 at 176.764 kb on - strand, within RS_RS00770 at 176.764 kb on - strand, within RS_RS00770 at 176.787 kb on + strand, within RS_RS00770 at 176.788 kb on - strand, within RS_RS00770 at 176.958 kb on + strand, within RS_RS00770 at 176.959 kb on - strand, within RS_RS00770 at 177.276 kb on + strand at 177.698 kb on + strand at 177.698 kb on + strand at 177.794 kb on + strand, within RS_RS00780 at 177.794 kb on + strand, within RS_RS00780 at 178.080 kb on - strand, within RS_RS00780 at 178.080 kb on - strand, within RS_RS00780 at 178.080 kb on - strand, within RS_RS00780 at 178.080 kb on - strand, within RS_RS00780 at 178.131 kb on + strand, within RS_RS00780 at 178.340 kb on - strand, within RS_RS00780 at 178.340 kb on - strand, within RS_RS00780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 176,450 + -0.4 176,451 - +2.0 176,485 + +0.2 176,486 - -1.6 176,763 + RS_RS00770 0.38 +0.0 176,764 - RS_RS00770 0.38 -0.5 176,764 - RS_RS00770 0.38 -0.4 176,764 - RS_RS00770 0.38 -0.9 176,787 + RS_RS00770 0.41 -2.2 176,788 - RS_RS00770 0.41 -0.0 176,958 + RS_RS00770 0.62 +0.2 176,959 - RS_RS00770 0.62 +1.0 177,276 + -0.5 177,698 + -0.5 177,698 + +1.4 177,794 + RS_RS00780 0.12 -0.3 177,794 + RS_RS00780 0.12 -0.2 178,080 - RS_RS00780 0.43 +0.7 178,080 - RS_RS00780 0.43 +1.2 178,080 - RS_RS00780 0.43 -2.6 178,080 - RS_RS00780 0.43 +1.6 178,131 + RS_RS00780 0.48 -0.1 178,340 - RS_RS00780 0.71 -0.5 178,340 - RS_RS00780 0.71 -0.7
Or see this region's nucleotide sequence