Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00505 and RS_RS00510 are separated by 260 nucleotides RS_RS00510 and RS_RS00515 overlap by 3 nucleotides
RS_RS00505: RS_RS00505 - hypothetical protein, at 114,282 to 117,731
_RS00505
RS_RS00510: RS_RS00510 - IS630 family transposase ISRso5, at 117,992 to 119,083
_RS00510
RS_RS00515: RS_RS00515 - hemolysin, at 119,081 to 121,909
_RS00515
Position (kb) 117
118
119
120 Strain fitness (log2 ratio) -2
-1
0
1
2 at 117.947 kb on - strand at 117.957 kb on - strand at 117.957 kb on - strand at 119.228 kb on - strand at 119.275 kb on + strand at 119.275 kb on + strand at 119.276 kb on - strand at 119.276 kb on - strand at 119.276 kb on - strand at 119.276 kb on - strand at 119.276 kb on - strand at 119.276 kb on - strand at 119.276 kb on - strand at 119.276 kb on - strand at 119.432 kb on + strand, within RS_RS00515 at 119.446 kb on - strand, within RS_RS00515 at 119.446 kb on - strand, within RS_RS00515 at 119.446 kb on - strand, within RS_RS00515 at 119.446 kb on - strand, within RS_RS00515 at 119.449 kb on - strand, within RS_RS00515 at 119.449 kb on - strand, within RS_RS00515 at 119.511 kb on + strand, within RS_RS00515 at 119.554 kb on + strand, within RS_RS00515 at 119.555 kb on - strand, within RS_RS00515 at 119.588 kb on - strand, within RS_RS00515 at 119.588 kb on - strand, within RS_RS00515 at 119.719 kb on + strand, within RS_RS00515 at 119.719 kb on + strand, within RS_RS00515 at 119.719 kb on + strand, within RS_RS00515 at 119.720 kb on - strand, within RS_RS00515 at 119.720 kb on - strand, within RS_RS00515 at 119.851 kb on + strand, within RS_RS00515 at 120.021 kb on + strand, within RS_RS00515 at 120.021 kb on + strand, within RS_RS00515 at 120.022 kb on - strand, within RS_RS00515 at 120.022 kb on - strand, within RS_RS00515
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 117,947 - +0.6 117,957 - -0.7 117,957 - +1.0 119,228 - -0.4 119,275 + -0.7 119,275 + -0.6 119,276 - +0.1 119,276 - +0.4 119,276 - +1.6 119,276 - -0.8 119,276 - -0.1 119,276 - -0.0 119,276 - -0.8 119,276 - +1.6 119,432 + RS_RS00515 0.12 -0.5 119,446 - RS_RS00515 0.13 +0.1 119,446 - RS_RS00515 0.13 -1.0 119,446 - RS_RS00515 0.13 -1.8 119,446 - RS_RS00515 0.13 +1.2 119,449 - RS_RS00515 0.13 +0.3 119,449 - RS_RS00515 0.13 -0.2 119,511 + RS_RS00515 0.15 +0.5 119,554 + RS_RS00515 0.17 -0.7 119,555 - RS_RS00515 0.17 +0.0 119,588 - RS_RS00515 0.18 -0.3 119,588 - RS_RS00515 0.18 +0.4 119,719 + RS_RS00515 0.23 -0.6 119,719 + RS_RS00515 0.23 -0.2 119,719 + RS_RS00515 0.23 -0.4 119,720 - RS_RS00515 0.23 -0.3 119,720 - RS_RS00515 0.23 -0.0 119,851 + RS_RS00515 0.27 +0.2 120,021 + RS_RS00515 0.33 +1.3 120,021 + RS_RS00515 0.33 -0.8 120,022 - RS_RS00515 0.33 +2.2 120,022 - RS_RS00515 0.33 +0.1
Or see this region's nucleotide sequence