Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00250 and RS_RS00255 are separated by 146 nucleotides RS_RS00255 and RS_RS00260 are separated by 39 nucleotides
RS_RS00250: RS_RS00250 - FAD-binding oxidoreductase, at 54,450 to 55,976
_RS00250
RS_RS00255: RS_RS00255 - class I SAM-dependent rRNA methyltransferase, at 56,123 to 57,316
_RS00255
RS_RS00260: RS_RS00260 - Tyrosine recombinase XerC 1, at 57,356 to 58,345
_RS00260
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 55.273 kb on + strand, within RS_RS00250 at 55.273 kb on + strand, within RS_RS00250 at 55.388 kb on + strand, within RS_RS00250 at 55.388 kb on + strand, within RS_RS00250 at 55.388 kb on + strand, within RS_RS00250 at 55.388 kb on + strand, within RS_RS00250 at 55.389 kb on - strand, within RS_RS00250 at 55.390 kb on + strand, within RS_RS00250 at 55.390 kb on + strand, within RS_RS00250 at 55.390 kb on + strand, within RS_RS00250 at 55.391 kb on - strand, within RS_RS00250 at 55.391 kb on - strand, within RS_RS00250 at 55.391 kb on - strand, within RS_RS00250 at 55.606 kb on + strand, within RS_RS00250 at 55.645 kb on + strand, within RS_RS00250 at 55.645 kb on + strand, within RS_RS00250 at 55.646 kb on - strand, within RS_RS00250 at 56.068 kb on + strand at 56.301 kb on + strand, within RS_RS00255 at 56.301 kb on + strand, within RS_RS00255 at 56.301 kb on + strand, within RS_RS00255 at 56.302 kb on - strand, within RS_RS00255 at 56.302 kb on - strand, within RS_RS00255 at 56.302 kb on - strand, within RS_RS00255 at 56.302 kb on - strand, within RS_RS00255 at 56.361 kb on + strand, within RS_RS00255 at 56.361 kb on + strand, within RS_RS00255 at 56.361 kb on + strand, within RS_RS00255 at 56.362 kb on - strand, within RS_RS00255 at 56.625 kb on + strand, within RS_RS00255 at 56.625 kb on + strand, within RS_RS00255 at 56.626 kb on - strand, within RS_RS00255 at 56.700 kb on + strand, within RS_RS00255 at 56.701 kb on - strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.737 kb on - strand, within RS_RS00255 at 56.737 kb on - strand, within RS_RS00255 at 56.737 kb on - strand, within RS_RS00255 at 56.737 kb on - strand, within RS_RS00255 at 56.739 kb on + strand, within RS_RS00255 at 56.739 kb on + strand, within RS_RS00255 at 56.740 kb on - strand, within RS_RS00255 at 56.854 kb on - strand, within RS_RS00255 at 56.854 kb on - strand, within RS_RS00255 at 57.254 kb on + strand at 57.255 kb on - strand at 57.390 kb on + strand at 57.391 kb on - strand at 57.424 kb on + strand at 57.424 kb on + strand at 57.873 kb on + strand, within RS_RS00260 at 57.873 kb on + strand, within RS_RS00260 at 57.873 kb on + strand, within RS_RS00260 at 57.873 kb on + strand, within RS_RS00260 at 58.057 kb on - strand, within RS_RS00260 at 58.224 kb on + strand, within RS_RS00260 at 58.225 kb on - strand, within RS_RS00260 at 58.279 kb on - strand at 58.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 55,273 + RS_RS00250 0.54 -1.1 55,273 + RS_RS00250 0.54 +0.1 55,388 + RS_RS00250 0.61 -1.0 55,388 + RS_RS00250 0.61 +0.9 55,388 + RS_RS00250 0.61 +0.1 55,388 + RS_RS00250 0.61 +0.2 55,389 - RS_RS00250 0.61 +0.6 55,390 + RS_RS00250 0.62 +1.6 55,390 + RS_RS00250 0.62 -1.6 55,390 + RS_RS00250 0.62 -1.1 55,391 - RS_RS00250 0.62 +0.6 55,391 - RS_RS00250 0.62 +1.0 55,391 - RS_RS00250 0.62 +2.6 55,606 + RS_RS00250 0.76 +1.0 55,645 + RS_RS00250 0.78 +0.2 55,645 + RS_RS00250 0.78 -0.2 55,646 - RS_RS00250 0.78 +0.2 56,068 + -0.6 56,301 + RS_RS00255 0.15 +0.8 56,301 + RS_RS00255 0.15 -0.3 56,301 + RS_RS00255 0.15 +3.6 56,302 - RS_RS00255 0.15 -0.3 56,302 - RS_RS00255 0.15 -0.2 56,302 - RS_RS00255 0.15 -0.0 56,302 - RS_RS00255 0.15 +0.9 56,361 + RS_RS00255 0.20 -0.1 56,361 + RS_RS00255 0.20 -0.2 56,361 + RS_RS00255 0.20 +4.1 56,362 - RS_RS00255 0.20 +1.6 56,625 + RS_RS00255 0.42 -0.6 56,625 + RS_RS00255 0.42 -0.4 56,626 - RS_RS00255 0.42 -1.2 56,700 + RS_RS00255 0.48 +1.6 56,701 - RS_RS00255 0.48 +1.2 56,736 + RS_RS00255 0.51 +0.6 56,736 + RS_RS00255 0.51 -1.7 56,736 + RS_RS00255 0.51 +0.5 56,736 + RS_RS00255 0.51 -1.1 56,736 + RS_RS00255 0.51 -0.1 56,737 - RS_RS00255 0.51 +1.0 56,737 - RS_RS00255 0.51 -1.1 56,737 - RS_RS00255 0.51 +0.3 56,737 - RS_RS00255 0.51 -0.8 56,739 + RS_RS00255 0.52 -1.5 56,739 + RS_RS00255 0.52 -1.4 56,740 - RS_RS00255 0.52 -0.6 56,854 - RS_RS00255 0.61 -1.7 56,854 - RS_RS00255 0.61 +0.6 57,254 + -0.1 57,255 - +0.5 57,390 + -1.6 57,391 - -1.3 57,424 + -0.0 57,424 + +2.6 57,873 + RS_RS00260 0.52 +1.0 57,873 + RS_RS00260 0.52 +2.6 57,873 + RS_RS00260 0.52 +2.6 57,873 + RS_RS00260 0.52 -0.8 58,057 - RS_RS00260 0.71 -2.2 58,224 + RS_RS00260 0.88 -1.3 58,225 - RS_RS00260 0.88 +1.8 58,279 - -1.2 58,279 - +0.8
Or see this region's nucleotide sequence