Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00225

Experiment: Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00220 and RS_RS00225 are separated by 100 nucleotidesRS_RS00225 and RS_RS00230 are separated by 69 nucleotidesRS_RS00230 and RS_RS00235 are separated by 409 nucleotides RS_RS00220: RS_RS00220 - ABC transporter substrate-binding protein, at 47,608 to 49,200 _RS00220 RS_RS00225: RS_RS00225 - GTP-binding protein, at 49,301 to 50,599 _RS00225 RS_RS00230: RS_RS00230 - RNA polymerase-binding protein DksA, at 50,669 to 51,088 _RS00230 RS_RS00235: RS_RS00235 - GTP-binding protein, at 51,498 to 52,586 _RS00235 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 48.377 kb on + strand, within RS_RS00220at 48.378 kb on - strand, within RS_RS00220at 48.378 kb on - strand, within RS_RS00220at 48.378 kb on - strand, within RS_RS00220at 48.378 kb on - strand, within RS_RS00220at 48.563 kb on + strand, within RS_RS00220at 48.620 kb on + strand, within RS_RS00220at 48.621 kb on - strand, within RS_RS00220at 48.701 kb on + strand, within RS_RS00220at 48.701 kb on + strand, within RS_RS00220at 48.701 kb on + strand, within RS_RS00220at 48.702 kb on - strand, within RS_RS00220at 48.702 kb on - strand, within RS_RS00220at 48.702 kb on - strand, within RS_RS00220at 48.803 kb on + strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.804 kb on - strand, within RS_RS00220at 48.812 kb on + strand, within RS_RS00220at 48.812 kb on + strand, within RS_RS00220at 48.813 kb on - strand, within RS_RS00220at 48.813 kb on - strand, within RS_RS00220at 48.857 kb on + strand, within RS_RS00220at 48.857 kb on + strand, within RS_RS00220at 48.857 kb on + strand, within RS_RS00220at 48.858 kb on - strand, within RS_RS00220at 49.219 kb on + strandat 49.710 kb on + strand, within RS_RS00225at 49.711 kb on - strand, within RS_RS00225at 49.756 kb on + strand, within RS_RS00225at 49.756 kb on + strand, within RS_RS00225at 50.154 kb on + strand, within RS_RS00225at 50.155 kb on - strand, within RS_RS00225at 50.305 kb on - strand, within RS_RS00225at 50.610 kb on - strandat 51.031 kb on - strand, within RS_RS00230at 51.031 kb on - strand, within RS_RS00230at 51.072 kb on - strandat 51.378 kb on - strandat 51.378 kb on - strandat 51.378 kb on - strandat 51.378 kb on - strandat 51.378 kb on - strandat 51.392 kb on + strandat 51.393 kb on - strandat 51.393 kb on - strandat 51.393 kb on - strandat 51.393 kb on - strandat 51.393 kb on - strandat 51.397 kb on + strandat 51.398 kb on - strandat 51.398 kb on - strandat 51.398 kb on - strandat 51.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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48,377 + RS_RS00220 0.48 +0.5
48,378 - RS_RS00220 0.48 +0.1
48,378 - RS_RS00220 0.48 -0.5
48,378 - RS_RS00220 0.48 +0.3
48,378 - RS_RS00220 0.48 +0.6
48,563 + RS_RS00220 0.60 -0.8
48,620 + RS_RS00220 0.64 +0.6
48,621 - RS_RS00220 0.64 -0.5
48,701 + RS_RS00220 0.69 +0.8
48,701 + RS_RS00220 0.69 +0.8
48,701 + RS_RS00220 0.69 -1.2
48,702 - RS_RS00220 0.69 +1.4
48,702 - RS_RS00220 0.69 +0.1
48,702 - RS_RS00220 0.69 +2.6
48,803 + RS_RS00220 0.75 -0.2
48,804 - RS_RS00220 0.75 +4.8
48,804 - RS_RS00220 0.75 +4.2
48,804 - RS_RS00220 0.75 +1.6
48,804 - RS_RS00220 0.75 -0.4
48,804 - RS_RS00220 0.75 +0.9
48,812 + RS_RS00220 0.76 -0.0
48,812 + RS_RS00220 0.76 -1.7
48,813 - RS_RS00220 0.76 +0.9
48,813 - RS_RS00220 0.76 +0.2
48,857 + RS_RS00220 0.78 -1.6
48,857 + RS_RS00220 0.78 -0.4
48,857 + RS_RS00220 0.78 -1.1
48,858 - RS_RS00220 0.78 +1.8
49,219 + +0.5
49,710 + RS_RS00225 0.31 -0.2
49,711 - RS_RS00225 0.32 -0.7
49,756 + RS_RS00225 0.35 +0.2
49,756 + RS_RS00225 0.35 -0.2
50,154 + RS_RS00225 0.66 +1.6
50,155 - RS_RS00225 0.66 -1.6
50,305 - RS_RS00225 0.77 +0.3
50,610 - +0.1
51,031 - RS_RS00230 0.86 +1.6
51,031 - RS_RS00230 0.86 +2.6
51,072 - +2.6
51,378 - -0.5
51,378 - -0.6
51,378 - -0.3
51,378 - -0.5
51,378 - -0.3
51,392 + +1.6
51,393 - +0.6
51,393 - -0.4
51,393 - -0.8
51,393 - +2.2
51,393 - +0.4
51,397 + +3.4
51,398 - -1.8
51,398 - -1.1
51,398 - -1.0
51,398 - +1.6

Or see this region's nucleotide sequence