Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18110

Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18105 and RS_RS18110 are separated by 23 nucleotidesRS_RS18110 and RS_RS18115 are separated by 994 nucleotides RS_RS18105: RS_RS18105 - aspartate aminotransferase family protein, at 244,341 to 246,851 _RS18105 RS_RS18110: RS_RS18110 - decarboxylase, at 246,875 to 249,301 _RS18110 RS_RS18115: RS_RS18115 - hypothetical protein, at 250,296 to 251,042 _RS18115 Position (kb) 246 247 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 246.086 kb on - strand, within RS_RS18105at 246.145 kb on + strand, within RS_RS18105at 246.185 kb on - strand, within RS_RS18105at 246.185 kb on - strand, within RS_RS18105at 246.202 kb on + strand, within RS_RS18105at 246.202 kb on + strand, within RS_RS18105at 246.202 kb on + strand, within RS_RS18105at 246.203 kb on - strand, within RS_RS18105at 246.259 kb on + strand, within RS_RS18105at 246.260 kb on - strand, within RS_RS18105at 246.439 kb on + strand, within RS_RS18105at 246.439 kb on + strand, within RS_RS18105at 246.649 kb on + strandat 246.649 kb on + strandat 246.649 kb on + strandat 246.649 kb on + strandat 246.650 kb on - strandat 246.837 kb on - strandat 246.837 kb on - strandat 246.837 kb on - strandat 247.110 kb on + strandat 247.126 kb on - strand, within RS_RS18110at 247.126 kb on - strand, within RS_RS18110at 247.161 kb on + strand, within RS_RS18110at 247.161 kb on + strand, within RS_RS18110at 247.162 kb on - strand, within RS_RS18110at 247.162 kb on - strand, within RS_RS18110at 247.302 kb on + strand, within RS_RS18110at 247.302 kb on + strand, within RS_RS18110at 247.303 kb on - strand, within RS_RS18110at 247.416 kb on + strand, within RS_RS18110at 247.428 kb on + strand, within RS_RS18110at 247.435 kb on - strand, within RS_RS18110at 247.684 kb on + strand, within RS_RS18110at 247.685 kb on - strand, within RS_RS18110at 247.827 kb on + strand, within RS_RS18110at 247.827 kb on + strand, within RS_RS18110at 247.828 kb on - strand, within RS_RS18110at 247.869 kb on + strand, within RS_RS18110at 247.869 kb on + strand, within RS_RS18110at 247.881 kb on + strand, within RS_RS18110at 248.587 kb on - strand, within RS_RS18110at 248.587 kb on - strand, within RS_RS18110at 248.587 kb on - strand, within RS_RS18110at 248.587 kb on - strand, within RS_RS18110at 248.922 kb on + strand, within RS_RS18110at 248.922 kb on + strand, within RS_RS18110at 248.923 kb on - strand, within RS_RS18110at 248.923 kb on - strand, within RS_RS18110at 248.923 kb on - strand, within RS_RS18110at 249.085 kb on - strandat 249.307 kb on + strandat 249.307 kb on + strandat 249.308 kb on - strandat 249.382 kb on + strandat 249.579 kb on + strandat 249.674 kb on - strandat 249.674 kb on - strandat 250.054 kb on - strandat 250.065 kb on + strandat 250.072 kb on + strandat 250.072 kb on + strandat 250.073 kb on - strandat 250.073 kb on - strandat 250.079 kb on + strandat 250.079 kb on + strandat 250.080 kb on - strandat 250.153 kb on + strandat 250.153 kb on + strandat 250.153 kb on + strandat 250.154 kb on - strandat 250.244 kb on - strandat 250.263 kb on - strandat 250.264 kb on + strandat 250.265 kb on - strandat 250.265 kb on - strandat 250.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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246,086 - RS_RS18105 0.69 +1.7
246,145 + RS_RS18105 0.72 +0.7
246,185 - RS_RS18105 0.73 -0.8
246,185 - RS_RS18105 0.73 -0.0
246,202 + RS_RS18105 0.74 +0.4
246,202 + RS_RS18105 0.74 +0.1
246,202 + RS_RS18105 0.74 +2.1
246,203 - RS_RS18105 0.74 +1.1
246,259 + RS_RS18105 0.76 +1.7
246,260 - RS_RS18105 0.76 +0.2
246,439 + RS_RS18105 0.84 +1.7
246,439 + RS_RS18105 0.84 -0.8
246,649 + +0.1
246,649 + -0.9
246,649 + -0.1
246,649 + -0.0
246,650 - +1.7
246,837 - +0.2
246,837 - +0.1
246,837 - +2.1
247,110 + +1.7
247,126 - RS_RS18110 0.10 +0.5
247,126 - RS_RS18110 0.10 +0.7
247,161 + RS_RS18110 0.12 -0.9
247,161 + RS_RS18110 0.12 -0.3
247,162 - RS_RS18110 0.12 -1.2
247,162 - RS_RS18110 0.12 +1.7
247,302 + RS_RS18110 0.18 -1.3
247,302 + RS_RS18110 0.18 +1.7
247,303 - RS_RS18110 0.18 -0.3
247,416 + RS_RS18110 0.22 +1.1
247,428 + RS_RS18110 0.23 +1.7
247,435 - RS_RS18110 0.23 +0.7
247,684 + RS_RS18110 0.33 -0.7
247,685 - RS_RS18110 0.33 +1.7
247,827 + RS_RS18110 0.39 -1.7
247,827 + RS_RS18110 0.39 -0.8
247,828 - RS_RS18110 0.39 +1.7
247,869 + RS_RS18110 0.41 -0.7
247,869 + RS_RS18110 0.41 -1.1
247,881 + RS_RS18110 0.41 -0.7
248,587 - RS_RS18110 0.71 +0.7
248,587 - RS_RS18110 0.71 -1.0
248,587 - RS_RS18110 0.71 -0.1
248,587 - RS_RS18110 0.71 -2.1
248,922 + RS_RS18110 0.84 -1.2
248,922 + RS_RS18110 0.84 -2.0
248,923 - RS_RS18110 0.84 -0.1
248,923 - RS_RS18110 0.84 -1.3
248,923 - RS_RS18110 0.84 -0.0
249,085 - +0.1
249,307 + -1.4
249,307 + +1.4
249,308 - -0.3
249,382 + -1.3
249,579 + +0.2
249,674 - -0.4
249,674 - +0.7
250,054 - -0.9
250,065 + -1.2
250,072 + -1.4
250,072 + -0.4
250,073 - -0.7
250,073 - -1.2
250,079 + -0.7
250,079 + +1.7
250,080 - -2.3
250,153 + +0.1
250,153 + +0.1
250,153 + -0.3
250,154 - +1.7
250,244 - +0.7
250,263 - +0.7
250,264 + -0.9
250,265 - -0.7
250,265 - -1.0
250,265 - +1.7

Or see this region's nucleotide sequence