Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06340 and RS_RS06345 are separated by 11 nucleotides RS_RS06345 and RS_RS06350 are separated by 30 nucleotides RS_RS06350 and RS_RS06355 overlap by 4 nucleotides
RS_RS06340: RS_RS06340 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 1,344,710 to 1,345,591
_RS06340
RS_RS06345: RS_RS06345 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 1,345,603 to 1,346,451
_RS06345
RS_RS06350: RS_RS06350 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 1,346,482 to 1,347,579
_RS06350
RS_RS06355: RS_RS06355 - glycerophosphodiester phosphodiesterase, at 1,347,576 to 1,348,334
_RS06355
Position (kb) 1346
1347
1348 Strain fitness (log2 ratio) -2
-1
0
1 at 1345.586 kb on + strand at 1345.912 kb on + strand, within RS_RS06345 at 1345.913 kb on - strand, within RS_RS06345 at 1345.999 kb on + strand, within RS_RS06345 at 1346.000 kb on - strand, within RS_RS06345 at 1346.246 kb on - strand, within RS_RS06345 at 1346.498 kb on + strand at 1347.046 kb on + strand, within RS_RS06350 at 1347.046 kb on + strand, within RS_RS06350 at 1347.046 kb on + strand, within RS_RS06350 at 1347.145 kb on + strand, within RS_RS06350 at 1347.146 kb on - strand, within RS_RS06350 at 1347.430 kb on + strand, within RS_RS06350 at 1347.430 kb on + strand, within RS_RS06350 at 1347.431 kb on - strand, within RS_RS06350 at 1348.233 kb on + strand, within RS_RS06355 at 1348.233 kb on + strand, within RS_RS06355 at 1348.369 kb on + strand at 1348.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,345,586 + -1.0 1,345,912 + RS_RS06345 0.36 +0.0 1,345,913 - RS_RS06345 0.37 -1.5 1,345,999 + RS_RS06345 0.47 -1.4 1,346,000 - RS_RS06345 0.47 -1.4 1,346,246 - RS_RS06345 0.76 -1.0 1,346,498 + -1.4 1,347,046 + RS_RS06350 0.51 -0.5 1,347,046 + RS_RS06350 0.51 -2.0 1,347,046 + RS_RS06350 0.51 +1.4 1,347,145 + RS_RS06350 0.60 -1.1 1,347,146 - RS_RS06350 0.60 +1.4 1,347,430 + RS_RS06350 0.86 -0.1 1,347,430 + RS_RS06350 0.86 -0.7 1,347,431 - RS_RS06350 0.86 -0.9 1,348,233 + RS_RS06355 0.87 -0.7 1,348,233 + RS_RS06355 0.87 -0.6 1,348,369 + +0.4 1,348,369 + -0.1
Or see this region's nucleotide sequence