Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06320 and RS_RS06325 are separated by 104 nucleotides RS_RS06325 and RS_RS06330 are separated by 172 nucleotides RS_RS06330 and RS_RS06335 are separated by 200 nucleotides
RS_RS06320: RS_RS06320 - nitrogen regulation protein NR(I), at 1,340,121 to 1,341,629
_RS06320
RS_RS06325: RS_RS06325 - hypothetical protein, at 1,341,734 to 1,342,060
_RS06325
RS_RS06330: RS_RS06330 - HAD family hydrolase, at 1,342,233 to 1,343,120
_RS06330
RS_RS06335: RS_RS06335 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 1,343,321 to 1,344,637
_RS06335
Position (kb) 1342
1343
1344 Strain fitness (log2 ratio) -2
-1
0
1 at 1341.722 kb on + strand at 1341.771 kb on + strand, within RS_RS06325 at 1341.772 kb on - strand, within RS_RS06325 at 1341.772 kb on - strand, within RS_RS06325 at 1341.918 kb on + strand, within RS_RS06325 at 1342.043 kb on + strand at 1342.044 kb on - strand at 1342.350 kb on - strand, within RS_RS06330 at 1343.158 kb on - strand at 1343.158 kb on - strand at 1343.220 kb on + strand at 1343.220 kb on + strand at 1343.221 kb on - strand at 1343.221 kb on - strand at 1343.504 kb on + strand, within RS_RS06335 at 1343.504 kb on + strand, within RS_RS06335 at 1343.684 kb on + strand, within RS_RS06335 at 1343.685 kb on - strand, within RS_RS06335 at 1343.685 kb on - strand, within RS_RS06335 at 1343.708 kb on + strand, within RS_RS06335 at 1343.768 kb on + strand, within RS_RS06335 at 1343.772 kb on - strand, within RS_RS06335 at 1343.885 kb on + strand, within RS_RS06335 at 1344.056 kb on + strand, within RS_RS06335 at 1344.056 kb on + strand, within RS_RS06335 at 1344.056 kb on + strand, within RS_RS06335 at 1344.065 kb on + strand, within RS_RS06335
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,341,722 + -0.2 1,341,771 + RS_RS06325 0.11 -0.9 1,341,772 - RS_RS06325 0.12 -1.5 1,341,772 - RS_RS06325 0.12 -1.4 1,341,918 + RS_RS06325 0.56 +0.4 1,342,043 + +1.4 1,342,044 - -0.4 1,342,350 - RS_RS06330 0.13 -0.9 1,343,158 - +1.4 1,343,158 - -0.8 1,343,220 + +0.6 1,343,220 + -1.1 1,343,221 - -0.3 1,343,221 - +1.4 1,343,504 + RS_RS06335 0.14 +1.4 1,343,504 + RS_RS06335 0.14 -0.6 1,343,684 + RS_RS06335 0.28 -0.8 1,343,685 - RS_RS06335 0.28 -0.6 1,343,685 - RS_RS06335 0.28 -2.3 1,343,708 + RS_RS06335 0.29 +0.4 1,343,768 + RS_RS06335 0.34 -0.2 1,343,772 - RS_RS06335 0.34 -2.2 1,343,885 + RS_RS06335 0.43 -0.3 1,344,056 + RS_RS06335 0.56 -1.1 1,344,056 + RS_RS06335 0.56 +1.4 1,344,056 + RS_RS06335 0.56 -0.2 1,344,065 + RS_RS06335 0.56 -1.4
Or see this region's nucleotide sequence