Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05295

Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS05290 and RS_RS05295 are separated by 114 nucleotidesRS_RS05295 and RS_RS05300 are separated by 122 nucleotides RS_RS05290: RS_RS05290 - beta-N-acetylhexosaminidase, at 1,120,323 to 1,121,375 _RS05290 RS_RS05295: RS_RS05295 - elongation factor P, at 1,121,490 to 1,122,050 _RS05295 RS_RS05300: RS_RS05300 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 1,122,173 to 1,123,363 _RS05300 Position (kb) 1121 1122 1123Strain fitness (log2 ratio) -2 -1 0 1 2at 1120.507 kb on + strand, within RS_RS05290at 1120.731 kb on + strand, within RS_RS05290at 1120.732 kb on - strand, within RS_RS05290at 1121.001 kb on + strand, within RS_RS05290at 1121.002 kb on - strand, within RS_RS05290at 1121.070 kb on + strand, within RS_RS05290at 1121.071 kb on - strand, within RS_RS05290at 1121.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,120,507 + RS_RS05290 0.17 -0.8
1,120,731 + RS_RS05290 0.39 -1.6
1,120,732 - RS_RS05290 0.39 -1.0
1,121,001 + RS_RS05290 0.64 +1.9
1,121,002 - RS_RS05290 0.64 -0.5
1,121,070 + RS_RS05290 0.71 -2.0
1,121,071 - RS_RS05290 0.71 +0.1
1,121,328 + +1.5

Or see this region's nucleotide sequence