Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05035

Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS05030 and RS_RS05035 are separated by 35 nucleotidesRS_RS05035 and RS_RS05040 are separated by 407 nucleotides RS_RS05030: RS_RS05030 - sugar ABC transporter ATP-binding protein, at 1,069,347 to 1,070,918 _RS05030 RS_RS05035: RS_RS05035 - sugar ABC transporter substrate-binding protein, at 1,070,954 to 1,071,913 _RS05035 RS_RS05040: RS_RS05040 - Fe-S cluster assembly transcriptional regulator IscR, at 1,072,321 to 1,072,902 _RS05040 Position (kb) 1070 1071 1072Strain fitness (log2 ratio) -1 0 1 2at 1070.318 kb on - strand, within RS_RS05030at 1070.505 kb on + strand, within RS_RS05030at 1070.506 kb on - strand, within RS_RS05030at 1071.141 kb on + strand, within RS_RS05035at 1071.715 kb on - strand, within RS_RS05035at 1071.980 kb on + strandat 1072.180 kb on - strandat 1072.258 kb on - strandat 1072.286 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,070,318 - RS_RS05030 0.62 +2.4
1,070,505 + RS_RS05030 0.74 -0.4
1,070,506 - RS_RS05030 0.74 +0.4
1,071,141 + RS_RS05035 0.19 -1.7
1,071,715 - RS_RS05035 0.79 +1.5
1,071,980 + -1.3
1,072,180 - -0.7
1,072,258 - -1.1
1,072,286 + -0.5

Or see this region's nucleotide sequence