Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03655 and RS_RS03660 overlap by 1 nucleotides RS_RS03660 and RS_RS03665 are separated by 169 nucleotides RS_RS03665 and RS_RS03670 are separated by 115 nucleotides
RS_RS03655: RS_RS03655 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 774,209 to 775,195
_RS03655
RS_RS03660: RS_RS03660 - type IV pilus modification protein PilV, at 775,195 to 775,812
_RS03660
RS_RS03665: RS_RS03665 - transcriptional regulator NrdR, at 775,982 to 776,431
_RS03665
RS_RS03670: RS_RS03670 - serine hydroxymethyltransferase, at 776,547 to 777,794
_RS03670
Position (kb) 775
776
777 Strain fitness (log2 ratio) -1
0
1 at 775.062 kb on + strand, within RS_RS03655 at 775.063 kb on - strand, within RS_RS03655 at 775.063 kb on - strand, within RS_RS03655 at 775.106 kb on + strand at 775.394 kb on + strand, within RS_RS03660 at 775.395 kb on - strand, within RS_RS03660 at 775.588 kb on + strand, within RS_RS03660 at 775.593 kb on - strand, within RS_RS03660 at 775.593 kb on - strand, within RS_RS03660 at 775.593 kb on - strand, within RS_RS03660 at 775.593 kb on - strand, within RS_RS03660 at 775.674 kb on - strand, within RS_RS03660 at 775.705 kb on - strand, within RS_RS03660 at 775.705 kb on - strand, within RS_RS03660 at 775.708 kb on + strand, within RS_RS03660 at 775.774 kb on - strand at 775.815 kb on + strand at 775.868 kb on + strand at 775.906 kb on - strand at 775.932 kb on - strand at 775.932 kb on - strand at 775.983 kb on + strand at 775.984 kb on - strand at 776.251 kb on - strand, within RS_RS03665 at 776.311 kb on - strand, within RS_RS03665
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 775,062 + RS_RS03655 0.86 -0.8 775,063 - RS_RS03655 0.87 +0.6 775,063 - RS_RS03655 0.87 +0.6 775,106 + -0.0 775,394 + RS_RS03660 0.32 +1.6 775,395 - RS_RS03660 0.32 -1.4 775,588 + RS_RS03660 0.64 -0.6 775,593 - RS_RS03660 0.64 -0.4 775,593 - RS_RS03660 0.64 -0.8 775,593 - RS_RS03660 0.64 +1.6 775,593 - RS_RS03660 0.64 -1.6 775,674 - RS_RS03660 0.78 +0.6 775,705 - RS_RS03660 0.83 +0.2 775,705 - RS_RS03660 0.83 -0.3 775,708 + RS_RS03660 0.83 +0.6 775,774 - +1.6 775,815 + +1.1 775,868 + +0.6 775,906 - +1.6 775,932 - -0.8 775,932 - -0.7 775,983 + -1.7 775,984 - -0.4 776,251 - RS_RS03665 0.60 +0.6 776,311 - RS_RS03665 0.73 +1.6
Or see this region's nucleotide sequence