Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02680 and RS_RS02685 are separated by 18 nucleotides RS_RS02685 and RS_RS02690 are separated by 87 nucleotides
RS_RS02680: RS_RS02680 - 3-oxoacyl-ACP reductase, at 576,660 to 578,072
_RS02680
RS_RS02685: RS_RS02685 - acyl-CoA dehydrogenase, at 578,091 to 580,598
_RS02685
RS_RS02690: RS_RS02690 - TetR/AcrR family transcriptional regulator, at 580,686 to 581,708
_RS02690
Position (kb) 578
579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 577.223 kb on - strand, within RS_RS02680 at 577.453 kb on + strand, within RS_RS02680 at 577.522 kb on + strand, within RS_RS02680 at 577.699 kb on + strand, within RS_RS02680 at 577.700 kb on - strand, within RS_RS02680 at 577.700 kb on - strand, within RS_RS02680 at 577.700 kb on - strand, within RS_RS02680 at 577.700 kb on - strand, within RS_RS02680 at 578.059 kb on + strand at 578.059 kb on + strand at 578.059 kb on + strand at 578.060 kb on - strand at 578.060 kb on - strand at 578.060 kb on - strand at 578.060 kb on - strand at 578.060 kb on - strand at 578.435 kb on - strand, within RS_RS02685 at 578.435 kb on - strand, within RS_RS02685 at 578.615 kb on - strand, within RS_RS02685 at 578.716 kb on + strand, within RS_RS02685 at 578.716 kb on + strand, within RS_RS02685 at 578.717 kb on - strand, within RS_RS02685 at 579.035 kb on - strand, within RS_RS02685 at 579.035 kb on - strand, within RS_RS02685 at 579.035 kb on - strand, within RS_RS02685 at 579.232 kb on + strand, within RS_RS02685 at 579.232 kb on + strand, within RS_RS02685 at 579.232 kb on + strand, within RS_RS02685 at 579.233 kb on - strand, within RS_RS02685 at 579.233 kb on - strand, within RS_RS02685 at 579.317 kb on - strand, within RS_RS02685 at 579.317 kb on - strand, within RS_RS02685 at 579.404 kb on - strand, within RS_RS02685 at 579.752 kb on + strand, within RS_RS02685 at 579.753 kb on - strand, within RS_RS02685 at 579.754 kb on + strand, within RS_RS02685 at 579.754 kb on + strand, within RS_RS02685 at 579.754 kb on + strand, within RS_RS02685 at 579.754 kb on + strand, within RS_RS02685 at 579.755 kb on - strand, within RS_RS02685 at 579.755 kb on - strand, within RS_RS02685 at 579.916 kb on + strand, within RS_RS02685 at 579.944 kb on - strand, within RS_RS02685 at 580.117 kb on + strand, within RS_RS02685 at 580.117 kb on + strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 580.118 kb on - strand, within RS_RS02685 at 581.303 kb on - strand, within RS_RS02690 at 581.317 kb on + strand, within RS_RS02690 at 581.317 kb on + strand, within RS_RS02690 at 581.318 kb on - strand, within RS_RS02690 at 581.347 kb on + strand, within RS_RS02690 at 581.570 kb on - strand, within RS_RS02690 at 581.570 kb on - strand, within RS_RS02690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 577,223 - RS_RS02680 0.40 -1.0 577,453 + RS_RS02680 0.56 -0.8 577,522 + RS_RS02680 0.61 -0.9 577,699 + RS_RS02680 0.74 -0.7 577,700 - RS_RS02680 0.74 -1.3 577,700 - RS_RS02680 0.74 -0.8 577,700 - RS_RS02680 0.74 +1.7 577,700 - RS_RS02680 0.74 +0.7 578,059 + +0.7 578,059 + -0.3 578,059 + +0.7 578,060 - +1.7 578,060 - -0.7 578,060 - +0.7 578,060 - +0.7 578,060 - +1.5 578,435 - RS_RS02685 0.14 -0.2 578,435 - RS_RS02685 0.14 -0.6 578,615 - RS_RS02685 0.21 +1.7 578,716 + RS_RS02685 0.25 -1.0 578,716 + RS_RS02685 0.25 +1.7 578,717 - RS_RS02685 0.25 +0.7 579,035 - RS_RS02685 0.38 -0.6 579,035 - RS_RS02685 0.38 -0.9 579,035 - RS_RS02685 0.38 +1.7 579,232 + RS_RS02685 0.45 -0.4 579,232 + RS_RS02685 0.45 -0.0 579,232 + RS_RS02685 0.45 +0.7 579,233 - RS_RS02685 0.46 +0.1 579,233 - RS_RS02685 0.46 -0.8 579,317 - RS_RS02685 0.49 -0.1 579,317 - RS_RS02685 0.49 -2.5 579,404 - RS_RS02685 0.52 +1.7 579,752 + RS_RS02685 0.66 -0.0 579,753 - RS_RS02685 0.66 -0.3 579,754 + RS_RS02685 0.66 +1.7 579,754 + RS_RS02685 0.66 -1.6 579,754 + RS_RS02685 0.66 +0.1 579,754 + RS_RS02685 0.66 +1.9 579,755 - RS_RS02685 0.66 -0.2 579,755 - RS_RS02685 0.66 -1.4 579,916 + RS_RS02685 0.73 +1.7 579,944 - RS_RS02685 0.74 -0.3 580,117 + RS_RS02685 0.81 -0.9 580,117 + RS_RS02685 0.81 +1.7 580,118 - RS_RS02685 0.81 +0.0 580,118 - RS_RS02685 0.81 -0.6 580,118 - RS_RS02685 0.81 +1.7 580,118 - RS_RS02685 0.81 -3.3 580,118 - RS_RS02685 0.81 -0.7 581,303 - RS_RS02690 0.60 +1.0 581,317 + RS_RS02690 0.62 -1.1 581,317 + RS_RS02690 0.62 +1.7 581,318 - RS_RS02690 0.62 +0.2 581,347 + RS_RS02690 0.65 -0.3 581,570 - RS_RS02690 0.86 +1.7 581,570 - RS_RS02690 0.86 +0.2
Or see this region's nucleotide sequence