Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01635

Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01630 and RS_RS01635 are separated by 25 nucleotidesRS_RS01635 and RS_RS01640 are separated by 78 nucleotidesRS_RS01640 and RS_RS01645 are separated by 103 nucleotides RS_RS01630: RS_RS01630 - sensor histidine kinase, at 362,536 to 364,533 _RS01630 RS_RS01635: RS_RS01635 - sigma-54-dependent Fis family transcriptional regulator, at 364,559 to 365,875 _RS01635 RS_RS01640: RS_RS01640 - membrane protein, at 365,954 to 366,505 _RS01640 RS_RS01645: RS_RS01645 - O-acetyl-ADP-ribose deacetylase, at 366,609 to 367,124 _RS01645 Position (kb) 364 365 366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 365.465 kb on + strand, within RS_RS01635at 365.465 kb on + strand, within RS_RS01635at 365.465 kb on + strand, within RS_RS01635at 365.571 kb on - strand, within RS_RS01635at 365.754 kb on - strandat 366.548 kb on + strandat 366.549 kb on - strandat 366.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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365,465 + RS_RS01635 0.69 +1.8
365,465 + RS_RS01635 0.69 -0.2
365,465 + RS_RS01635 0.69 -1.3
365,571 - RS_RS01635 0.77 +0.5
365,754 - +1.8
366,548 + -2.9
366,549 - +0.0
366,637 + -1.0

Or see this region's nucleotide sequence