Experiment: mouse 4; day 2; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12665 and BBR_RS12670 are separated by 413 nucleotides BBR_RS12670 and BBR_RS12675 are separated by 63 nucleotides BBR_RS12675 and BBR_RS12680 are separated by 6 nucleotides
BBR_RS12665: BBR_RS12665 - acyltransferase, at 597,657 to 598,724
_RS12665
BBR_RS12670: BBR_RS12670 - hypothetical protein, at 599,138 to 599,587
_RS12670
BBR_RS12675: BBR_RS12675 - transposase, at 599,651 to 600,457
_RS12675
BBR_RS12680: BBR_RS12680 - hypothetical protein, at 600,464 to 600,736
_RS12680
Position (kb) 599
600 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 598.152 kb on - strand, within BBR_RS12665 at 598.180 kb on + strand, within BBR_RS12665 at 598.180 kb on + strand, within BBR_RS12665 at 598.185 kb on - strand, within BBR_RS12665 at 598.188 kb on - strand, within BBR_RS12665 at 598.188 kb on - strand, within BBR_RS12665 at 598.188 kb on - strand, within BBR_RS12665 at 598.188 kb on - strand, within BBR_RS12665 at 598.203 kb on - strand, within BBR_RS12665 at 598.238 kb on + strand, within BBR_RS12665 at 598.260 kb on + strand, within BBR_RS12665 at 598.260 kb on + strand, within BBR_RS12665 at 598.260 kb on + strand, within BBR_RS12665 at 598.375 kb on + strand, within BBR_RS12665 at 598.379 kb on + strand, within BBR_RS12665 at 598.384 kb on - strand, within BBR_RS12665 at 598.387 kb on + strand, within BBR_RS12665 at 598.387 kb on - strand, within BBR_RS12665 at 598.395 kb on - strand, within BBR_RS12665 at 598.402 kb on + strand, within BBR_RS12665 at 598.405 kb on - strand, within BBR_RS12665 at 598.410 kb on + strand, within BBR_RS12665 at 598.412 kb on + strand, within BBR_RS12665 at 598.412 kb on + strand, within BBR_RS12665 at 598.421 kb on + strand, within BBR_RS12665 at 598.441 kb on - strand, within BBR_RS12665 at 598.446 kb on + strand, within BBR_RS12665 at 598.447 kb on + strand, within BBR_RS12665 at 598.457 kb on + strand, within BBR_RS12665 at 598.477 kb on + strand, within BBR_RS12665 at 598.485 kb on - strand, within BBR_RS12665 at 598.490 kb on + strand, within BBR_RS12665 at 598.491 kb on + strand, within BBR_RS12665 at 598.491 kb on + strand, within BBR_RS12665 at 598.499 kb on - strand, within BBR_RS12665 at 598.499 kb on - strand, within BBR_RS12665 at 598.499 kb on - strand, within BBR_RS12665 at 598.501 kb on + strand, within BBR_RS12665 at 598.501 kb on + strand, within BBR_RS12665 at 598.509 kb on - strand, within BBR_RS12665 at 598.516 kb on + strand, within BBR_RS12665 at 598.533 kb on + strand, within BBR_RS12665 at 598.533 kb on + strand, within BBR_RS12665 at 598.533 kb on - strand, within BBR_RS12665 at 598.533 kb on - strand, within BBR_RS12665 at 598.546 kb on + strand, within BBR_RS12665 at 598.551 kb on + strand, within BBR_RS12665 at 598.564 kb on - strand, within BBR_RS12665 at 598.566 kb on + strand, within BBR_RS12665 at 598.592 kb on + strand, within BBR_RS12665 at 598.604 kb on + strand, within BBR_RS12665 at 598.605 kb on - strand, within BBR_RS12665 at 598.648 kb on + strand at 598.653 kb on + strand at 598.653 kb on + strand at 598.770 kb on + strand at 598.794 kb on - strand at 598.801 kb on + strand at 598.801 kb on + strand at 598.835 kb on + strand at 598.835 kb on + strand at 598.843 kb on - strand at 598.843 kb on - strand at 598.843 kb on - strand at 598.851 kb on + strand at 598.888 kb on + strand at 598.888 kb on + strand at 598.889 kb on + strand at 598.889 kb on + strand at 598.895 kb on - strand at 598.897 kb on - strand at 598.901 kb on + strand at 598.901 kb on + strand at 598.903 kb on + strand at 598.903 kb on + strand at 598.909 kb on - strand at 598.909 kb on - strand at 598.909 kb on - strand at 598.909 kb on - strand at 598.909 kb on - strand at 598.910 kb on - strand at 598.910 kb on - strand at 598.931 kb on - strand at 598.936 kb on + strand at 598.936 kb on + strand at 598.944 kb on - strand at 598.944 kb on - strand at 598.944 kb on - strand at 598.960 kb on + strand at 598.984 kb on + strand at 599.008 kb on - strand at 599.018 kb on + strand at 599.026 kb on - strand at 599.026 kb on - strand at 599.033 kb on + strand at 599.041 kb on + strand at 599.041 kb on - strand at 599.041 kb on - strand at 599.052 kb on + strand at 599.060 kb on - strand at 599.088 kb on - strand at 599.091 kb on + strand at 599.100 kb on + strand at 599.108 kb on + strand at 599.108 kb on - strand at 599.110 kb on + strand at 599.179 kb on - strand at 599.197 kb on - strand, within BBR_RS12670 at 599.222 kb on - strand, within BBR_RS12670 at 599.226 kb on + strand, within BBR_RS12670 at 599.226 kb on + strand, within BBR_RS12670 at 599.258 kb on - strand, within BBR_RS12670 at 599.263 kb on - strand, within BBR_RS12670 at 599.276 kb on + strand, within BBR_RS12670 at 599.292 kb on - strand, within BBR_RS12670 at 599.299 kb on + strand, within BBR_RS12670 at 599.300 kb on + strand, within BBR_RS12670 at 599.308 kb on - strand, within BBR_RS12670 at 599.414 kb on - strand, within BBR_RS12670 at 599.416 kb on + strand, within BBR_RS12670 at 599.421 kb on + strand, within BBR_RS12670 at 599.422 kb on + strand, within BBR_RS12670 at 599.436 kb on + strand, within BBR_RS12670 at 599.436 kb on + strand, within BBR_RS12670 at 599.453 kb on + strand, within BBR_RS12670 at 599.459 kb on + strand, within BBR_RS12670 at 599.459 kb on + strand, within BBR_RS12670 at 599.461 kb on + strand, within BBR_RS12670 at 599.461 kb on + strand, within BBR_RS12670 at 599.461 kb on + strand, within BBR_RS12670 at 599.461 kb on + strand, within BBR_RS12670 at 599.461 kb on + strand, within BBR_RS12670 at 599.462 kb on - strand, within BBR_RS12670 at 599.462 kb on - strand, within BBR_RS12670 at 599.478 kb on + strand, within BBR_RS12670 at 599.481 kb on + strand, within BBR_RS12670 at 599.483 kb on + strand, within BBR_RS12670 at 599.483 kb on + strand, within BBR_RS12670 at 599.489 kb on - strand, within BBR_RS12670 at 599.532 kb on + strand, within BBR_RS12670 at 599.532 kb on + strand, within BBR_RS12670 at 599.532 kb on + strand, within BBR_RS12670 at 599.540 kb on - strand, within BBR_RS12670 at 599.540 kb on - strand, within BBR_RS12670 at 599.540 kb on - strand, within BBR_RS12670 at 599.540 kb on - strand, within BBR_RS12670 at 599.598 kb on + strand at 599.598 kb on + strand at 599.610 kb on - strand at 599.613 kb on + strand at 599.613 kb on + strand at 599.648 kb on + strand at 599.648 kb on + strand at 599.648 kb on + strand at 599.680 kb on + strand at 599.680 kb on + strand at 599.680 kb on + strand at 599.680 kb on + strand at 599.680 kb on + strand at 599.688 kb on - strand at 599.727 kb on - strand at 599.745 kb on - strand, within BBR_RS12675 at 599.750 kb on - strand, within BBR_RS12675 at 599.769 kb on + strand, within BBR_RS12675 at 599.841 kb on - strand, within BBR_RS12675 at 599.885 kb on + strand, within BBR_RS12675 at 599.965 kb on + strand, within BBR_RS12675 at 599.965 kb on + strand, within BBR_RS12675 at 599.972 kb on + strand, within BBR_RS12675 at 599.973 kb on - strand, within BBR_RS12675 at 599.973 kb on - strand, within BBR_RS12675 at 600.010 kb on - strand, within BBR_RS12675 at 600.011 kb on - strand, within BBR_RS12675 at 600.024 kb on + strand, within BBR_RS12675 at 600.024 kb on + strand, within BBR_RS12675 at 600.024 kb on + strand, within BBR_RS12675 at 600.024 kb on + strand, within BBR_RS12675 at 600.024 kb on + strand, within BBR_RS12675 at 600.024 kb on + strand, within BBR_RS12675 at 600.032 kb on - strand, within BBR_RS12675 at 600.032 kb on - strand, within BBR_RS12675 at 600.051 kb on - strand, within BBR_RS12675 at 600.056 kb on + strand, within BBR_RS12675 at 600.058 kb on + strand, within BBR_RS12675 at 600.066 kb on + strand, within BBR_RS12675 at 600.071 kb on + strand, within BBR_RS12675 at 600.071 kb on + strand, within BBR_RS12675 at 600.076 kb on + strand, within BBR_RS12675 at 600.079 kb on - strand, within BBR_RS12675 at 600.079 kb on - strand, within BBR_RS12675 at 600.079 kb on - strand, within BBR_RS12675 at 600.079 kb on - strand, within BBR_RS12675 at 600.081 kb on - strand, within BBR_RS12675 at 600.081 kb on - strand, within BBR_RS12675 at 600.110 kb on - strand, within BBR_RS12675 at 600.127 kb on + strand, within BBR_RS12675 at 600.172 kb on + strand, within BBR_RS12675 at 600.205 kb on + strand, within BBR_RS12675 at 600.213 kb on - strand, within BBR_RS12675 at 600.213 kb on - strand, within BBR_RS12675 at 600.237 kb on - strand, within BBR_RS12675 at 600.250 kb on + strand, within BBR_RS12675 at 600.250 kb on + strand, within BBR_RS12675 at 600.255 kb on + strand, within BBR_RS12675 at 600.256 kb on - strand, within BBR_RS12675 at 600.256 kb on - strand, within BBR_RS12675 at 600.256 kb on - strand, within BBR_RS12675 at 600.260 kb on + strand, within BBR_RS12675 at 600.263 kb on - strand, within BBR_RS12675 at 600.263 kb on - strand, within BBR_RS12675 at 600.268 kb on - strand, within BBR_RS12675 at 600.268 kb on - strand, within BBR_RS12675 at 600.268 kb on - strand, within BBR_RS12675 at 600.284 kb on + strand, within BBR_RS12675 at 600.292 kb on - strand, within BBR_RS12675 at 600.331 kb on - strand, within BBR_RS12675 at 600.331 kb on - strand, within BBR_RS12675 at 600.343 kb on + strand, within BBR_RS12675 at 600.343 kb on + strand, within BBR_RS12675 at 600.343 kb on + strand, within BBR_RS12675 at 600.351 kb on - strand, within BBR_RS12675 at 600.351 kb on - strand, within BBR_RS12675 at 600.351 kb on - strand, within BBR_RS12675 at 600.351 kb on - strand, within BBR_RS12675 at 600.351 kb on - strand, within BBR_RS12675 at 600.351 kb on - strand, within BBR_RS12675 at 600.361 kb on + strand, within BBR_RS12675 at 600.376 kb on - strand, within BBR_RS12675 at 600.398 kb on + strand at 600.398 kb on + strand at 600.398 kb on + strand at 600.398 kb on + strand at 600.401 kb on - strand at 600.402 kb on - strand at 600.403 kb on + strand at 600.403 kb on + strand at 600.403 kb on + strand at 600.411 kb on - strand at 600.411 kb on - strand at 600.411 kb on - strand at 600.411 kb on - strand at 600.478 kb on - strand at 600.478 kb on - strand at 600.548 kb on + strand, within BBR_RS12680 at 600.557 kb on + strand, within BBR_RS12680 at 600.570 kb on - strand, within BBR_RS12680 at 600.580 kb on - strand, within BBR_RS12680
Per-strain Table
Position Strand Gene LocusTag Fraction mouse 4; day 2; diet=StandardDiet; sample=FecalPellet remove 598,152 - BBR_RS12665 0.46 -2.2 598,180 + BBR_RS12665 0.49 -2.2 598,180 + BBR_RS12665 0.49 -1.6 598,185 - BBR_RS12665 0.49 -1.0 598,188 - BBR_RS12665 0.50 +0.0 598,188 - BBR_RS12665 0.50 -1.2 598,188 - BBR_RS12665 0.50 -1.7 598,188 - BBR_RS12665 0.50 -1.4 598,203 - BBR_RS12665 0.51 -1.2 598,238 + BBR_RS12665 0.54 +0.5 598,260 + BBR_RS12665 0.56 +2.0 598,260 + BBR_RS12665 0.56 -1.2 598,260 + BBR_RS12665 0.56 -0.7 598,375 + BBR_RS12665 0.67 +0.4 598,379 + BBR_RS12665 0.68 +1.3 598,384 - BBR_RS12665 0.68 -0.3 598,387 + BBR_RS12665 0.68 -0.8 598,387 - BBR_RS12665 0.68 +1.4 598,395 - BBR_RS12665 0.69 -2.2 598,402 + BBR_RS12665 0.70 -1.7 598,405 - BBR_RS12665 0.70 -2.8 598,410 + BBR_RS12665 0.71 -0.1 598,412 + BBR_RS12665 0.71 +2.7 598,412 + BBR_RS12665 0.71 +0.9 598,421 + BBR_RS12665 0.72 -0.2 598,441 - BBR_RS12665 0.73 -0.4 598,446 + BBR_RS12665 0.74 -0.9 598,447 + BBR_RS12665 0.74 +0.1 598,457 + BBR_RS12665 0.75 -1.2 598,477 + BBR_RS12665 0.77 -2.8 598,485 - BBR_RS12665 0.78 -3.6 598,490 + BBR_RS12665 0.78 -0.2 598,491 + BBR_RS12665 0.78 +0.7 598,491 + BBR_RS12665 0.78 -0.1 598,499 - BBR_RS12665 0.79 -0.5 598,499 - BBR_RS12665 0.79 -1.2 598,499 - BBR_RS12665 0.79 +0.2 598,501 + BBR_RS12665 0.79 +0.5 598,501 + BBR_RS12665 0.79 -0.3 598,509 - BBR_RS12665 0.80 -2.3 598,516 + BBR_RS12665 0.80 +0.3 598,533 + BBR_RS12665 0.82 -0.2 598,533 + BBR_RS12665 0.82 -0.5 598,533 - BBR_RS12665 0.82 -2.8 598,533 - BBR_RS12665 0.82 -2.3 598,546 + BBR_RS12665 0.83 +0.4 598,551 + BBR_RS12665 0.84 +0.4 598,564 - BBR_RS12665 0.85 -2.3 598,566 + BBR_RS12665 0.85 -0.4 598,592 + BBR_RS12665 0.88 -0.5 598,604 + BBR_RS12665 0.89 -0.6 598,605 - BBR_RS12665 0.89 -2.5 598,648 + +1.0 598,653 + -0.7 598,653 + -0.5 598,770 + -0.1 598,794 - -2.2 598,801 + +0.2 598,801 + -3.6 598,835 + -0.5 598,835 + -3.0 598,843 - +0.0 598,843 - -1.3 598,843 - -0.4 598,851 + -0.3 598,888 + -3.4 598,888 + +0.6 598,889 + -3.5 598,889 + +0.9 598,895 - -3.4 598,897 - -1.2 598,901 + +0.5 598,901 + -0.7 598,903 + +1.0 598,903 + -2.4 598,909 - -1.8 598,909 - -0.7 598,909 - -0.0 598,909 - +0.5 598,909 - +1.3 598,910 - -3.0 598,910 - -2.8 598,931 - -0.6 598,936 + +0.2 598,936 + +0.3 598,944 - +0.2 598,944 - +0.1 598,944 - -0.5 598,960 + -2.1 598,984 + -0.3 599,008 - +0.1 599,018 + +1.4 599,026 - +0.6 599,026 - -0.6 599,033 + +0.4 599,041 + +1.2 599,041 - -1.4 599,041 - -0.5 599,052 + -0.5 599,060 - +0.6 599,088 - +1.0 599,091 + -0.3 599,100 + -0.8 599,108 + -1.5 599,108 - +0.1 599,110 + -0.3 599,179 - -3.0 599,197 - BBR_RS12670 0.13 -1.6 599,222 - BBR_RS12670 0.19 +0.1 599,226 + BBR_RS12670 0.20 -0.9 599,226 + BBR_RS12670 0.20 -1.6 599,258 - BBR_RS12670 0.27 -0.7 599,263 - BBR_RS12670 0.28 -0.2 599,276 + BBR_RS12670 0.31 +0.4 599,292 - BBR_RS12670 0.34 -0.9 599,299 + BBR_RS12670 0.36 -0.4 599,300 + BBR_RS12670 0.36 -0.7 599,308 - BBR_RS12670 0.38 -1.6 599,414 - BBR_RS12670 0.61 -0.2 599,416 + BBR_RS12670 0.62 -3.4 599,421 + BBR_RS12670 0.63 -3.1 599,422 + BBR_RS12670 0.63 -4.1 599,436 + BBR_RS12670 0.66 +0.0 599,436 + BBR_RS12670 0.66 -2.7 599,453 + BBR_RS12670 0.70 -0.3 599,459 + BBR_RS12670 0.71 +0.7 599,459 + BBR_RS12670 0.71 -2.8 599,461 + BBR_RS12670 0.72 +0.1 599,461 + BBR_RS12670 0.72 -0.9 599,461 + BBR_RS12670 0.72 -0.5 599,461 + BBR_RS12670 0.72 -2.5 599,461 + BBR_RS12670 0.72 -1.2 599,462 - BBR_RS12670 0.72 -0.3 599,462 - BBR_RS12670 0.72 -1.3 599,478 + BBR_RS12670 0.76 +0.7 599,481 + BBR_RS12670 0.76 -1.0 599,483 + BBR_RS12670 0.77 +0.7 599,483 + BBR_RS12670 0.77 +0.8 599,489 - BBR_RS12670 0.78 -1.7 599,532 + BBR_RS12670 0.88 -1.6 599,532 + BBR_RS12670 0.88 +1.2 599,532 + BBR_RS12670 0.88 +0.1 599,540 - BBR_RS12670 0.89 -0.1 599,540 - BBR_RS12670 0.89 +0.0 599,540 - BBR_RS12670 0.89 -2.9 599,540 - BBR_RS12670 0.89 -2.9 599,598 + -1.5 599,598 + -1.3 599,610 - -0.4 599,613 + -0.5 599,613 + -0.7 599,648 + -0.5 599,648 + -0.3 599,648 + +0.3 599,680 + +0.8 599,680 + +1.6 599,680 + +0.2 599,680 + +0.4 599,680 + +0.3 599,688 - +0.8 599,727 - +1.1 599,745 - BBR_RS12675 0.12 +0.5 599,750 - BBR_RS12675 0.12 -3.3 599,769 + BBR_RS12675 0.15 -3.2 599,841 - BBR_RS12675 0.24 -0.7 599,885 + BBR_RS12675 0.29 +1.1 599,965 + BBR_RS12675 0.39 +1.4 599,965 + BBR_RS12675 0.39 +1.1 599,972 + BBR_RS12675 0.40 +0.4 599,973 - BBR_RS12675 0.40 +0.8 599,973 - BBR_RS12675 0.40 +0.0 600,010 - BBR_RS12675 0.44 +0.5 600,011 - BBR_RS12675 0.45 -0.2 600,024 + BBR_RS12675 0.46 -2.8 600,024 + BBR_RS12675 0.46 +1.5 600,024 + BBR_RS12675 0.46 -3.5 600,024 + BBR_RS12675 0.46 +1.1 600,024 + BBR_RS12675 0.46 -1.3 600,024 + BBR_RS12675 0.46 +0.8 600,032 - BBR_RS12675 0.47 -3.0 600,032 - BBR_RS12675 0.47 -0.1 600,051 - BBR_RS12675 0.50 -1.2 600,056 + BBR_RS12675 0.50 +0.4 600,058 + BBR_RS12675 0.50 +1.0 600,066 + BBR_RS12675 0.51 +0.5 600,071 + BBR_RS12675 0.52 -1.3 600,071 + BBR_RS12675 0.52 +1.6 600,076 + BBR_RS12675 0.53 -0.5 600,079 - BBR_RS12675 0.53 -0.6 600,079 - BBR_RS12675 0.53 -0.3 600,079 - BBR_RS12675 0.53 -1.2 600,079 - BBR_RS12675 0.53 +0.1 600,081 - BBR_RS12675 0.53 +1.5 600,081 - BBR_RS12675 0.53 +0.7 600,110 - BBR_RS12675 0.57 +0.7 600,127 + BBR_RS12675 0.59 -0.2 600,172 + BBR_RS12675 0.65 -0.5 600,205 + BBR_RS12675 0.69 +1.2 600,213 - BBR_RS12675 0.70 -0.1 600,213 - BBR_RS12675 0.70 -2.3 600,237 - BBR_RS12675 0.73 -1.7 600,250 + BBR_RS12675 0.74 +1.4 600,250 + BBR_RS12675 0.74 +1.3 600,255 + BBR_RS12675 0.75 +1.7 600,256 - BBR_RS12675 0.75 +0.6 600,256 - BBR_RS12675 0.75 +0.5 600,256 - BBR_RS12675 0.75 -0.2 600,260 + BBR_RS12675 0.75 -1.0 600,263 - BBR_RS12675 0.76 +0.2 600,263 - BBR_RS12675 0.76 -0.4 600,268 - BBR_RS12675 0.76 -0.0 600,268 - BBR_RS12675 0.76 +0.6 600,268 - BBR_RS12675 0.76 -0.6 600,284 + BBR_RS12675 0.78 +0.5 600,292 - BBR_RS12675 0.79 -0.7 600,331 - BBR_RS12675 0.84 -1.9 600,331 - BBR_RS12675 0.84 -0.8 600,343 + BBR_RS12675 0.86 -2.7 600,343 + BBR_RS12675 0.86 +1.0 600,343 + BBR_RS12675 0.86 -1.6 600,351 - BBR_RS12675 0.87 +0.7 600,351 - BBR_RS12675 0.87 +1.3 600,351 - BBR_RS12675 0.87 -3.4 600,351 - BBR_RS12675 0.87 -0.5 600,351 - BBR_RS12675 0.87 -0.7 600,351 - BBR_RS12675 0.87 -3.6 600,361 + BBR_RS12675 0.88 +0.7 600,376 - BBR_RS12675 0.90 -0.8 600,398 + +0.9 600,398 + +0.3 600,398 + +1.7 600,398 + -1.7 600,401 - +1.1 600,402 - -1.4 600,403 + +0.2 600,403 + +0.3 600,403 + +0.6 600,411 - -1.2 600,411 - +0.4 600,411 - -0.5 600,411 - -2.0 600,478 - +0.1 600,478 - -2.3 600,548 + BBR_RS12680 0.31 -3.1 600,557 + BBR_RS12680 0.34 +0.1 600,570 - BBR_RS12680 0.39 -1.0 600,580 - BBR_RS12680 0.42 -1.1
Or see this region's nucleotide sequence