Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0864

Experiment: Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM) with 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0863 and DVU0864 are separated by 137 nucleotidesDVU0864 and DVU0865 overlap by 4 nucleotides DVU0863: DVU0863 - flagellar hook-associated protein 2, putative (TIGR), at 954,684 to 956,411 DVU0863 DVU0864: DVU0864 - glycoprotease family protein, putative (TIGR), at 956,549 to 957,334 DVU0864 DVU0865: DVU0865 - membrane-associated zinc metalloprotease, putative (TIGR), at 957,331 to 958,395 DVU0865 Position (kb) 956 957 958Strain fitness (log2 ratio) -2 -1 0 1at 955.626 kb on - strand, within DVU0863at 955.697 kb on + strand, within DVU0863at 955.705 kb on - strand, within DVU0863at 955.837 kb on - strand, within DVU0863at 955.957 kb on + strand, within DVU0863at 955.975 kb on - strand, within DVU0863at 955.977 kb on - strand, within DVU0863at 956.044 kb on - strand, within DVU0863at 956.136 kb on - strand, within DVU0863at 956.200 kb on - strand, within DVU0863at 956.302 kb on - strandat 956.346 kb on - strandat 956.439 kb on - strandat 956.440 kb on - strandat 956.531 kb on + strandat 956.533 kb on + strandat 956.533 kb on + strandat 956.541 kb on - strandat 956.541 kb on - strandat 956.560 kb on - strandat 956.660 kb on + strand, within DVU0864at 956.683 kb on + strand, within DVU0864at 956.685 kb on + strand, within DVU0864at 957.385 kb on - strandat 957.394 kb on - strandat 958.056 kb on - strand, within DVU0865at 958.128 kb on - strand, within DVU0865at 958.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM) with 0.1% Yeast Extract
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955,626 - DVU0863 0.55 -1.8
955,697 + DVU0863 0.59 -0.5
955,705 - DVU0863 0.59 -0.6
955,837 - DVU0863 0.67 -0.7
955,957 + DVU0863 0.74 -0.1
955,975 - DVU0863 0.75 -0.4
955,977 - DVU0863 0.75 +0.2
956,044 - DVU0863 0.79 -0.4
956,136 - DVU0863 0.84 -0.3
956,200 - DVU0863 0.88 +0.1
956,302 - -0.6
956,346 - -0.5
956,439 - -1.2
956,440 - -1.0
956,531 + -0.4
956,533 + -0.5
956,533 + -1.1
956,541 - -1.2
956,541 - +1.1
956,560 - +0.6
956,660 + DVU0864 0.14 -0.2
956,683 + DVU0864 0.17 -0.6
956,685 + DVU0864 0.17 -0.7
957,385 - +0.9
957,394 - +0.5
958,056 - DVU0865 0.68 -0.8
958,128 - DVU0865 0.75 -1.3
958,309 - +0.1

Or see this region's nucleotide sequence