Experiment: Post-colonization (Day 1) - Cage2;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0654 and BT0655 are separated by 155 nucleotides BT0655 and BT0656 are separated by 112 nucleotides
BT0654: BT0654 - two-component sensor histidine kinase (NCBI ptt file), at 803,832 to 805,814
BT0654
BT0655: BT0655 - superoxide dismutase [Fe] (NCBI ptt file), at 805,970 to 806,551
BT0655
BT0656: BT0656 - conserved hypothetical protein (NCBI ptt file), at 806,664 to 808,406
BT0656
Position (kb) 805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 805.015 kb on + strand, within BT0654 at 805.015 kb on + strand, within BT0654 at 805.017 kb on + strand, within BT0654 at 805.017 kb on + strand, within BT0654 at 805.034 kb on - strand, within BT0654 at 805.065 kb on - strand, within BT0654 at 805.317 kb on + strand, within BT0654 at 805.376 kb on + strand, within BT0654 at 805.451 kb on - strand, within BT0654 at 805.583 kb on + strand, within BT0654 at 805.669 kb on + strand at 805.686 kb on - strand at 805.814 kb on + strand at 805.869 kb on + strand at 805.942 kb on + strand at 805.948 kb on - strand at 805.948 kb on - strand at 806.022 kb on - strand at 806.322 kb on - strand, within BT0655 at 806.360 kb on - strand, within BT0655 at 806.360 kb on - strand, within BT0655 at 806.409 kb on + strand, within BT0655 at 806.444 kb on + strand, within BT0655 at 806.445 kb on - strand, within BT0655 at 806.448 kb on + strand, within BT0655 at 806.523 kb on + strand at 806.565 kb on - strand at 806.573 kb on + strand at 806.574 kb on - strand at 806.576 kb on + strand at 806.578 kb on + strand at 806.669 kb on + strand at 806.837 kb on + strand at 806.837 kb on + strand at 806.838 kb on - strand at 806.863 kb on + strand, within BT0656 at 806.988 kb on - strand, within BT0656 at 807.082 kb on + strand, within BT0656 at 807.295 kb on + strand, within BT0656 at 807.296 kb on - strand, within BT0656 at 807.305 kb on + strand, within BT0656
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 1) - Cage2;Mouse5 remove 805,015 + BT0654 0.60 +0.5 805,015 + BT0654 0.60 +1.3 805,017 + BT0654 0.60 -0.6 805,017 + BT0654 0.60 -0.7 805,034 - BT0654 0.61 +1.1 805,065 - BT0654 0.62 -1.0 805,317 + BT0654 0.75 -0.6 805,376 + BT0654 0.78 +0.4 805,451 - BT0654 0.82 -0.5 805,583 + BT0654 0.88 +0.1 805,669 + +0.1 805,686 - +1.7 805,814 + -2.1 805,869 + +0.4 805,942 + +1.2 805,948 - -1.7 805,948 - -1.0 806,022 - -0.6 806,322 - BT0655 0.60 -2.3 806,360 - BT0655 0.67 -1.2 806,360 - BT0655 0.67 +1.1 806,409 + BT0655 0.75 -2.1 806,444 + BT0655 0.81 -2.6 806,445 - BT0655 0.82 -1.2 806,448 + BT0655 0.82 +0.3 806,523 + -2.9 806,565 - +0.1 806,573 + -0.9 806,574 - -1.1 806,576 + -2.6 806,578 + -2.1 806,669 + +0.1 806,837 + -0.5 806,837 + +0.7 806,838 - -0.4 806,863 + BT0656 0.11 -0.6 806,988 - BT0656 0.19 +0.6 807,082 + BT0656 0.24 +2.1 807,295 + BT0656 0.36 +0.7 807,296 - BT0656 0.36 +0.1 807,305 + BT0656 0.37 -0.2
Or see this region's nucleotide sequence