Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0172

Experiment: Post-colonization (Day 1) - Cage2;Mouse5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0171 and BT0172 are separated by 114 nucleotides BT0171: BT0171 - conserved hypothetical protein (NCBI ptt file), at 179,107 to 180,390 BT0171 BT0172: BT0172 - hypothetical protein (NCBI ptt file), at 180,505 to 180,900 BT0172 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1 2 3at 179.550 kb on + strand, within BT0171at 179.552 kb on + strand, within BT0171at 179.572 kb on - strand, within BT0171at 179.650 kb on + strand, within BT0171at 179.710 kb on + strand, within BT0171at 179.720 kb on + strand, within BT0171at 179.740 kb on + strand, within BT0171at 179.760 kb on + strand, within BT0171at 179.763 kb on + strand, within BT0171at 179.790 kb on + strand, within BT0171at 179.864 kb on - strand, within BT0171at 179.932 kb on + strand, within BT0171at 179.932 kb on + strand, within BT0171at 179.956 kb on + strand, within BT0171at 179.961 kb on - strand, within BT0171at 180.022 kb on + strand, within BT0171at 180.022 kb on + strand, within BT0171at 180.109 kb on - strand, within BT0171at 180.154 kb on - strand, within BT0171at 180.180 kb on - strand, within BT0171at 180.250 kb on + strand, within BT0171at 180.265 kb on - strandat 180.308 kb on - strandat 180.485 kb on - strandat 180.547 kb on - strandat 180.560 kb on - strand, within BT0172at 180.623 kb on + strand, within BT0172at 180.624 kb on - strand, within BT0172at 180.643 kb on - strand, within BT0172at 180.695 kb on - strand, within BT0172at 180.698 kb on - strand, within BT0172at 180.727 kb on + strand, within BT0172at 180.727 kb on + strand, within BT0172at 180.728 kb on - strand, within BT0172at 180.731 kb on + strand, within BT0172at 180.731 kb on + strand, within BT0172at 180.731 kb on + strand, within BT0172at 180.732 kb on - strand, within BT0172at 180.732 kb on - strand, within BT0172at 180.732 kb on - strand, within BT0172at 180.749 kb on + strand, within BT0172at 180.788 kb on - strand, within BT0172at 180.838 kb on + strand, within BT0172at 180.858 kb on + strand, within BT0172at 180.859 kb on - strand, within BT0172at 180.877 kb on - strandat 180.935 kb on + strandat 180.990 kb on + strandat 180.998 kb on + strandat 181.018 kb on - strandat 181.035 kb on - strandat 181.053 kb on + strandat 181.055 kb on + strandat 181.057 kb on + strandat 181.096 kb on - strandat 181.104 kb on + strandat 181.122 kb on + strandat 181.141 kb on - strandat 181.147 kb on - strandat 181.151 kb on + strandat 181.152 kb on - strandat 181.153 kb on + strandat 181.153 kb on + strandat 181.154 kb on - strandat 181.154 kb on - strandat 181.260 kb on - strandat 181.346 kb on + strandat 181.346 kb on + strandat 181.484 kb on - strandat 181.501 kb on + strandat 181.519 kb on + strandat 181.536 kb on - strandat 181.536 kb on - strandat 181.565 kb on + strandat 181.566 kb on - strandat 181.621 kb on - strandat 181.655 kb on + strandat 181.713 kb on + strandat 181.768 kb on - strandat 181.787 kb on + strandat 181.790 kb on - strandat 181.790 kb on - strandat 181.790 kb on - strandat 181.795 kb on + strandat 181.818 kb on + strandat 181.827 kb on + strandat 181.828 kb on - strandat 181.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Post-colonization (Day 1) - Cage2;Mouse5
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179,550 + BT0171 0.35 -0.6
179,552 + BT0171 0.35 +2.0
179,572 - BT0171 0.36 -1.3
179,650 + BT0171 0.42 -1.8
179,710 + BT0171 0.47 -0.9
179,720 + BT0171 0.48 +0.8
179,740 + BT0171 0.49 -1.9
179,760 + BT0171 0.51 +0.2
179,763 + BT0171 0.51 -0.0
179,790 + BT0171 0.53 -0.4
179,864 - BT0171 0.59 +0.3
179,932 + BT0171 0.64 -1.3
179,932 + BT0171 0.64 +1.4
179,956 + BT0171 0.66 -0.6
179,961 - BT0171 0.67 +0.0
180,022 + BT0171 0.71 +1.5
180,022 + BT0171 0.71 -1.8
180,109 - BT0171 0.78 -0.2
180,154 - BT0171 0.82 +2.0
180,180 - BT0171 0.84 +1.6
180,250 + BT0171 0.89 -0.4
180,265 - +0.1
180,308 - +0.7
180,485 - -0.5
180,547 - -1.6
180,560 - BT0172 0.14 -1.8
180,623 + BT0172 0.30 -2.0
180,624 - BT0172 0.30 +0.3
180,643 - BT0172 0.35 -1.8
180,695 - BT0172 0.48 -1.1
180,698 - BT0172 0.49 +0.7
180,727 + BT0172 0.56 -1.7
180,727 + BT0172 0.56 -0.6
180,728 - BT0172 0.56 -2.0
180,731 + BT0172 0.57 -0.8
180,731 + BT0172 0.57 +0.0
180,731 + BT0172 0.57 -1.0
180,732 - BT0172 0.57 -2.4
180,732 - BT0172 0.57 -1.0
180,732 - BT0172 0.57 +0.3
180,749 + BT0172 0.62 -0.7
180,788 - BT0172 0.71 -1.3
180,838 + BT0172 0.84 -0.5
180,858 + BT0172 0.89 -0.1
180,859 - BT0172 0.89 -1.2
180,877 - +0.6
180,935 + +0.3
180,990 + -1.8
180,998 + -1.3
181,018 - -1.6
181,035 - -1.6
181,053 + -2.2
181,055 + -1.2
181,057 + -0.5
181,096 - -1.4
181,104 + +0.8
181,122 + +0.8
181,141 - -0.7
181,147 - +0.8
181,151 + +3.3
181,152 - +2.0
181,153 + +0.8
181,153 + +0.5
181,154 - +0.2
181,154 - +0.3
181,260 - -0.0
181,346 + +1.0
181,346 + +0.0
181,484 - -0.7
181,501 + -1.8
181,519 + +0.7
181,536 - -0.1
181,536 - -1.6
181,565 + -1.9
181,566 - -2.3
181,621 - -1.2
181,655 + +0.8
181,713 + -1.8
181,768 - +0.4
181,787 + -0.2
181,790 - -0.6
181,790 - -1.0
181,790 - +0.5
181,795 + -0.4
181,818 + +1.0
181,827 + -0.5
181,828 - -0.4
181,895 - -1.0

Or see this region's nucleotide sequence