Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10755

Experiment: mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mouse 12; day 1; diet=HighFatHighSugar; sample=FecalPellet
137,204	-		BBR_RS10750	0.23	+1.3
137,213	+		BBR_RS10750	0.24	-1.2
137,213	+		BBR_RS10750	0.24	+0.9
137,213	+		BBR_RS10750	0.24	-3.8
137,227	+		BBR_RS10750	0.25	+0.9
137,230	-		BBR_RS10750	0.25	+1.3
137,232	+		BBR_RS10750	0.26	+1.0
137,239	+		BBR_RS10750	0.26	-0.0
137,240	-		BBR_RS10750	0.26	+0.6
137,258	+		BBR_RS10750	0.28	-5.0
137,258	+		BBR_RS10750	0.28	+1.4
137,259	-		BBR_RS10750	0.28	+1.3
137,269	-		BBR_RS10750	0.29	-4.9
137,269	-		BBR_RS10750	0.29	+0.6
137,272	+		BBR_RS10750	0.29	-4.9
137,276	+		BBR_RS10750	0.30	-2.9
137,290	+		BBR_RS10750	0.31	-4.5
137,295	+		BBR_RS10750	0.31	-4.8
137,295	+		BBR_RS10750	0.31	-1.0
137,303	-		BBR_RS10750	0.32	+0.1
137,313	-		BBR_RS10750	0.33	-2.9
137,319	+		BBR_RS10750	0.34	-4.6
137,319	+		BBR_RS10750	0.34	+0.7
137,320	+		BBR_RS10750	0.34	+1.3
137,325	-		BBR_RS10750	0.34	-4.1
137,327	-		BBR_RS10750	0.34	+1.3
137,327	-		BBR_RS10750	0.34	-0.1
137,329	+		BBR_RS10750	0.35	+3.1
137,354	+		BBR_RS10750	0.37	+1.0
137,364	-		BBR_RS10750	0.38	+1.0
137,364	-		BBR_RS10750	0.38	-2.0
137,364	-		BBR_RS10750	0.38	+1.9
137,389	+		BBR_RS10750	0.40	+2.9
137,397	-		BBR_RS10750	0.41	-0.9
137,400	+		BBR_RS10750	0.41	+0.7
137,400	-		BBR_RS10750	0.41	+1.0
137,411	+		BBR_RS10750	0.42	-3.5
137,411	+		BBR_RS10750	0.42	-3.9
137,411	+		BBR_RS10750	0.42	+1.4
137,411	+		BBR_RS10750	0.42	-0.3
137,419	-		BBR_RS10750	0.43	-4.6
137,419	-		BBR_RS10750	0.43	+1.8
137,419	-		BBR_RS10750	0.43	-3.3
137,430	+		BBR_RS10750	0.44	-2.2
137,430	+		BBR_RS10750	0.44	-3.3
137,430	+		BBR_RS10750	0.44	-3.8
137,430	+		BBR_RS10750	0.44	+2.0
137,430	+		BBR_RS10750	0.44	+2.1
137,430	+		BBR_RS10750	0.44	+0.9
137,430	+		BBR_RS10750	0.44	-0.6
137,430	+		BBR_RS10750	0.44	+1.8
137,430	+		BBR_RS10750	0.44	+1.7
137,432	+		BBR_RS10750	0.44	+0.9
137,432	+		BBR_RS10750	0.44	-2.8
137,432	+		BBR_RS10750	0.44	+1.5
137,436	-		BBR_RS10750	0.45	+1.3
137,438	-		BBR_RS10750	0.45	-4.1
137,438	-		BBR_RS10750	0.45	-3.3
137,438	-		BBR_RS10750	0.45	-4.1
137,438	-		BBR_RS10750	0.45	+0.6
137,438	-		BBR_RS10750	0.45	+1.6
137,438	-		BBR_RS10750	0.45	-1.3
137,498	+		BBR_RS10750	0.50	+0.3
137,498	+		BBR_RS10750	0.50	-0.1
137,498	+		BBR_RS10750	0.50	-1.1
137,498	+		BBR_RS10750	0.50	-0.7
137,498	+		BBR_RS10750	0.50	+1.1
137,498	+		BBR_RS10750	0.50	-3.8
137,501	+		BBR_RS10750	0.51	-3.3
137,506	-		BBR_RS10750	0.51	+1.4
137,506	-		BBR_RS10750	0.51	+1.3
137,506	-		BBR_RS10750	0.51	+0.5
137,506	-		BBR_RS10750	0.51	+1.7
137,521	+		BBR_RS10750	0.53	+0.7
137,521	+		BBR_RS10750	0.53	+1.0
137,521	+		BBR_RS10750	0.53	+1.9
137,521	+		BBR_RS10750	0.53	+0.9
137,521	+		BBR_RS10750	0.53	-1.0
137,521	+		BBR_RS10750	0.53	-0.1
137,529	-		BBR_RS10750	0.53	+1.0
137,529	-		BBR_RS10750	0.53	+1.7
137,540	+		BBR_RS10750	0.54	+1.0
137,572	-		BBR_RS10750	0.57	+2.2
137,572	-		BBR_RS10750	0.57	+1.7
137,574	+		BBR_RS10750	0.58	-1.5
137,574	+		BBR_RS10750	0.58	+0.5
137,582	-		BBR_RS10750	0.58	+0.2
137,592	+		BBR_RS10750	0.59	-2.7
137,599	+		BBR_RS10750	0.60	-3.5
137,599	+		BBR_RS10750	0.60	+0.0
137,608	+		BBR_RS10750	0.61	+0.7
137,608	+		BBR_RS10750	0.61	-0.2
137,608	+		BBR_RS10750	0.61	-5.2
137,608	+		BBR_RS10750	0.61	-1.6
137,608	+		BBR_RS10750	0.61	+0.3
137,608	+		BBR_RS10750	0.61	+0.1
137,616	-		BBR_RS10750	0.62	-4.2
137,616	-		BBR_RS10750	0.62	+2.1
137,616	-		BBR_RS10750	0.62	-2.0
137,616	-		BBR_RS10750	0.62	-3.9
137,616	-		BBR_RS10750	0.62	-3.0
137,616	-		BBR_RS10750	0.62	-2.9
137,616	-		BBR_RS10750	0.62	+1.4
137,618	+		BBR_RS10750	0.62	-4.8
137,618	+		BBR_RS10750	0.62	+0.8
137,618	+		BBR_RS10750	0.62	-0.5
137,638	+		BBR_RS10750	0.64	+0.9
137,649	+		BBR_RS10750	0.65	+0.1
137,657	-		BBR_RS10750	0.65	+0.7
137,685	+		BBR_RS10750	0.68	+2.0
137,685	+		BBR_RS10750	0.68	+1.4
137,685	+		BBR_RS10750	0.68	-1.0
137,685	+		BBR_RS10750	0.68	-0.4
137,740	-		BBR_RS10750	0.73	-0.1
137,744	+		BBR_RS10750	0.74	-5.2
137,744	+		BBR_RS10750	0.74	+1.3
137,774	+		BBR_RS10750	0.76	+0.5
137,774	+		BBR_RS10750	0.76	+1.2
137,775	-		BBR_RS10750	0.76	-0.2
137,775	-		BBR_RS10750	0.76	+0.9
137,787	+		BBR_RS10750	0.78	-0.2
137,787	+		BBR_RS10750	0.78	+0.7
137,794	+		BBR_RS10750	0.78	-4.4
137,795	-		BBR_RS10750	0.78	-4.1
137,796	-		BBR_RS10750	0.78	+0.8
137,824	-		BBR_RS10750	0.81	+1.5
137,837	-		BBR_RS10750	0.82	+0.2
137,857	+		BBR_RS10750	0.84	+2.5
137,878	+		BBR_RS10750	0.86	+0.0
137,878	+		BBR_RS10750	0.86	-3.2
137,886	+		BBR_RS10750	0.87	+0.0
137,886	+		BBR_RS10750	0.87	+1.7
137,886	-		BBR_RS10750	0.87	-0.1
137,929	-				+1.6
137,929	-				+0.5
137,931	-				+0.8
137,931	-				-0.4
137,943	+				-0.1
137,953	-				+2.0
137,968	+				+1.2
137,968	-				+1.5
137,979	+				+1.7
137,987	-				+0.4
138,025	-				-3.1
138,030	-				-2.7
138,047	-				+0.5
138,047	-				-4.1
138,049	-				+0.9
138,073	-				+1.8
138,075	+				-3.2
138,105	-				-0.2
138,133	-				+2.1
138,142	+				-1.0
138,144	+				+0.6
138,144	+				+0.5
138,144	+				+1.1
138,144	+				+1.6
138,144	+				+0.7
138,144	+				-2.7
138,144	+				-0.9
138,144	+				-0.8
138,144	-				+0.9
138,150	-				+0.3
138,152	-				-0.1
138,152	-				+0.4
138,152	-				-3.4
138,152	-				-2.7
138,152	-				-4.3
138,152	-				-0.6
138,152	-				+1.0
138,152	-				-4.8
138,152	-				-0.3
138,152	-				+1.2
138,152	-				+2.5
138,152	-				+0.8
138,152	-				+1.7
138,235	+				-3.0
138,235	+				-3.2
138,235	+				-2.9
138,311	+				-2.6
138,311	+				-2.3
138,345	+		BBR_RS10755	0.12	-2.2
138,345	-		BBR_RS10755	0.12	-2.6
138,347	-		BBR_RS10755	0.12	-4.9
138,537	-		BBR_RS10755	0.27	-2.2
138,613	-		BBR_RS10755	0.33	-1.8
138,641	-		BBR_RS10755	0.35	-3.6
138,651	-		BBR_RS10755	0.36	-2.9
138,651	-		BBR_RS10755	0.36	-3.7
138,689	-		BBR_RS10755	0.38	-1.8
138,706	+		BBR_RS10755	0.40	-3.0
138,833	+		BBR_RS10755	0.50	-2.3
138,840	-		BBR_RS10755	0.50	-2.7
138,847	+		BBR_RS10755	0.51	-2.8
138,857	+		BBR_RS10755	0.52	-2.9
138,948	+		BBR_RS10755	0.59	-1.3
138,962	-		BBR_RS10755	0.60	-0.6
138,965	-		BBR_RS10755	0.60	-2.0
138,994	-		BBR_RS10755	0.62	-3.3
139,039	+		BBR_RS10755	0.66	-3.5
139,124	-		BBR_RS10755	0.72	-2.7
139,135	+		BBR_RS10755	0.73	-2.9
139,145	+		BBR_RS10755	0.74	-3.5
139,158	+		BBR_RS10755	0.75	-2.6
139,235	-		BBR_RS10755	0.81	-2.3
139,235	-		BBR_RS10755	0.81	-1.6
139,389	+				-3.1
139,477	+				+1.6
139,479	-				-0.1
139,502	+				+0.0
139,510	+				+0.1
139,518	-				+1.1
139,522	+				-0.9
139,559	+				-4.4
139,602	+				-1.8
139,610	-				+0.6
139,610	-				-0.5
139,621	+				+1.5
139,621	+				+1.5
139,621	+				-0.8
139,629	-				+0.5
139,629	-				-4.7
139,629	-				+0.9
139,637	+				-3.5
139,637	+				+1.2
139,638	-				+0.4
139,649	+				-1.1
139,650	-				-0.2
139,699	-		BBR_RS10760	0.12	-4.1
139,718	-		BBR_RS10760	0.14	+0.8
139,775	-		BBR_RS10760	0.17	+2.0
139,782	-		BBR_RS10760	0.18	+0.8
139,787	+		BBR_RS10760	0.18	+1.5
139,787	+		BBR_RS10760	0.18	-4.8
139,795	-		BBR_RS10760	0.18	-3.4
139,797	+		BBR_RS10760	0.18	-4.5
139,797	+		BBR_RS10760	0.18	-0.7
139,797	+		BBR_RS10760	0.18	+1.0
139,797	+		BBR_RS10760	0.18	+0.7
139,805	-		BBR_RS10760	0.19	+0.2
139,805	-		BBR_RS10760	0.19	-3.9
139,807	-		BBR_RS10760	0.19	+1.2
139,812	+		BBR_RS10760	0.19	-5.3
139,864	+		BBR_RS10760	0.23	-4.4
139,880	-		BBR_RS10760	0.24	+2.0
139,901	+		BBR_RS10760	0.25	-4.1
139,909	-		BBR_RS10760	0.26	+0.0
139,909	-		BBR_RS10760	0.26	+0.3
139,909	-		BBR_RS10760	0.26	-4.5
139,931	-		BBR_RS10760	0.27	-0.6
139,944	+		BBR_RS10760	0.28	-4.8
139,944	+		BBR_RS10760	0.28	+0.4
139,946	+		BBR_RS10760	0.28	-4.6
139,946	+		BBR_RS10760	0.28	+0.0
139,946	+		BBR_RS10760	0.28	+0.6
139,952	-		BBR_RS10760	0.28	-2.6
139,952	-		BBR_RS10760	0.28	+1.4
139,952	-		BBR_RS10760	0.28	+2.3
139,952	-		BBR_RS10760	0.28	+0.6
139,954	-		BBR_RS10760	0.28	-4.3
139,954	-		BBR_RS10760	0.28	+1.1
139,958	-		BBR_RS10760	0.29	+0.7
139,981	-		BBR_RS10760	0.30	+1.4
140,031	-		BBR_RS10760	0.33	-2.8
140,054	+		BBR_RS10760	0.35	-4.3
140,055	-		BBR_RS10760	0.35	+0.1
140,104	+		BBR_RS10760	0.38	-3.6
140,104	+		BBR_RS10760	0.38	-5.6
140,104	+		BBR_RS10760	0.38	+1.3
140,112	-		BBR_RS10760	0.38	-3.5
140,113	+		BBR_RS10760	0.38	+0.2
140,125	+		BBR_RS10760	0.39	-4.3
140,197	+		BBR_RS10760	0.44	+1.2
140,213	-		BBR_RS10760	0.45	+0.3
140,215	+		BBR_RS10760	0.45	-3.6
140,219	+		BBR_RS10760	0.45	+2.0
140,219	+		BBR_RS10760	0.45	-3.0
140,227	-		BBR_RS10760	0.46	+1.4
140,234	+		BBR_RS10760	0.46	+0.0
140,299	+		BBR_RS10760	0.50	+0.5
140,334	-		BBR_RS10760	0.52	-2.7
140,349	+		BBR_RS10760	0.53	-1.1
140,355	+		BBR_RS10760	0.54	-0.6
140,357	-		BBR_RS10760	0.54	-1.1
140,371	-		BBR_RS10760	0.55	-0.7
140,439	-		BBR_RS10760	0.59	+0.2
140,472	+		BBR_RS10760	0.61	-2.0