Experiment: mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12925 and BBR_RS12930 are separated by 273 nucleotides BBR_RS12930 and BBR_RS12935 are separated by 20 nucleotides BBR_RS12935 and BBR_RS12940 are separated by 400 nucleotides
BBR_RS12925: BBR_RS12925 - hypothetical protein, at 652,445 to 652,648
_RS12925
BBR_RS12930: BBR_RS12930 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 652,922 to 653,584
_RS12930
BBR_RS12935: BBR_RS12935 - A/G-specific adenine glycosylase, at 653,605 to 654,567
_RS12935
BBR_RS12940: BBR_RS12940 - hypothetical protein, at 654,968 to 655,549
_RS12940
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 652.638 kb on + strand at 652.658 kb on - strand at 652.743 kb on + strand at 652.743 kb on - strand at 652.743 kb on - strand at 652.744 kb on - strand at 652.749 kb on - strand at 652.830 kb on - strand at 652.845 kb on - strand at 652.849 kb on - strand at 652.849 kb on - strand at 652.913 kb on + strand at 652.949 kb on + strand at 652.953 kb on - strand at 652.957 kb on - strand at 652.990 kb on + strand, within BBR_RS12930 at 652.990 kb on + strand, within BBR_RS12930 at 652.990 kb on + strand, within BBR_RS12930 at 652.990 kb on + strand, within BBR_RS12930 at 652.990 kb on + strand, within BBR_RS12930 at 652.990 kb on + strand, within BBR_RS12930 at 652.990 kb on + strand, within BBR_RS12930 at 652.990 kb on + strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 652.998 kb on - strand, within BBR_RS12930 at 653.011 kb on + strand, within BBR_RS12930 at 653.013 kb on + strand, within BBR_RS12930 at 653.032 kb on + strand, within BBR_RS12930 at 653.068 kb on + strand, within BBR_RS12930 at 653.086 kb on + strand, within BBR_RS12930 at 653.096 kb on + strand, within BBR_RS12930 at 653.096 kb on + strand, within BBR_RS12930 at 653.135 kb on + strand, within BBR_RS12930 at 653.157 kb on - strand, within BBR_RS12930 at 653.187 kb on + strand, within BBR_RS12930 at 653.199 kb on - strand, within BBR_RS12930 at 653.204 kb on - strand, within BBR_RS12930 at 653.204 kb on - strand, within BBR_RS12930 at 653.223 kb on + strand, within BBR_RS12930 at 653.225 kb on - strand, within BBR_RS12930 at 653.235 kb on - strand, within BBR_RS12930 at 653.235 kb on - strand, within BBR_RS12930 at 653.242 kb on + strand, within BBR_RS12930 at 653.243 kb on + strand, within BBR_RS12930 at 653.251 kb on - strand, within BBR_RS12930 at 653.263 kb on + strand, within BBR_RS12930 at 653.271 kb on - strand, within BBR_RS12930 at 653.276 kb on - strand, within BBR_RS12930 at 653.278 kb on + strand, within BBR_RS12930 at 653.286 kb on - strand, within BBR_RS12930 at 653.286 kb on - strand, within BBR_RS12930 at 653.286 kb on - strand, within BBR_RS12930 at 653.286 kb on - strand, within BBR_RS12930 at 653.286 kb on - strand, within BBR_RS12930 at 653.286 kb on - strand, within BBR_RS12930 at 653.368 kb on + strand, within BBR_RS12930 at 653.370 kb on + strand, within BBR_RS12930 at 653.371 kb on - strand, within BBR_RS12930 at 653.378 kb on + strand, within BBR_RS12930 at 653.378 kb on - strand, within BBR_RS12930 at 653.389 kb on + strand, within BBR_RS12930 at 653.399 kb on - strand, within BBR_RS12930 at 653.421 kb on + strand, within BBR_RS12930 at 653.429 kb on + strand, within BBR_RS12930 at 653.451 kb on + strand, within BBR_RS12930 at 653.459 kb on - strand, within BBR_RS12930 at 653.483 kb on - strand, within BBR_RS12930 at 653.602 kb on - strand at 653.605 kb on + strand at 653.639 kb on + strand at 653.639 kb on + strand at 653.639 kb on - strand at 653.643 kb on + strand at 653.651 kb on - strand at 653.685 kb on + strand at 653.685 kb on + strand at 653.692 kb on - strand at 653.711 kb on + strand, within BBR_RS12935 at 653.711 kb on + strand, within BBR_RS12935 at 653.715 kb on + strand, within BBR_RS12935 at 653.736 kb on + strand, within BBR_RS12935 at 653.736 kb on + strand, within BBR_RS12935 at 653.780 kb on + strand, within BBR_RS12935 at 653.780 kb on + strand, within BBR_RS12935 at 653.787 kb on + strand, within BBR_RS12935 at 653.788 kb on - strand, within BBR_RS12935 at 653.788 kb on - strand, within BBR_RS12935 at 653.788 kb on - strand, within BBR_RS12935 at 653.797 kb on - strand, within BBR_RS12935 at 653.797 kb on - strand, within BBR_RS12935 at 653.809 kb on + strand, within BBR_RS12935 at 653.809 kb on + strand, within BBR_RS12935 at 653.809 kb on + strand, within BBR_RS12935 at 653.816 kb on - strand, within BBR_RS12935 at 653.816 kb on - strand, within BBR_RS12935 at 653.816 kb on - strand, within BBR_RS12935 at 653.818 kb on + strand, within BBR_RS12935 at 653.826 kb on - strand, within BBR_RS12935 at 653.826 kb on - strand, within BBR_RS12935 at 653.916 kb on + strand, within BBR_RS12935 at 653.916 kb on + strand, within BBR_RS12935 at 653.916 kb on + strand, within BBR_RS12935 at 653.930 kb on - strand, within BBR_RS12935 at 653.946 kb on + strand, within BBR_RS12935 at 653.959 kb on - strand, within BBR_RS12935 at 653.963 kb on + strand, within BBR_RS12935 at 653.966 kb on - strand, within BBR_RS12935 at 653.977 kb on + strand, within BBR_RS12935 at 653.977 kb on + strand, within BBR_RS12935 at 653.977 kb on + strand, within BBR_RS12935 at 653.977 kb on + strand, within BBR_RS12935 at 653.977 kb on + strand, within BBR_RS12935 at 653.977 kb on + strand, within BBR_RS12935 at 653.985 kb on - strand, within BBR_RS12935 at 653.985 kb on - strand, within BBR_RS12935 at 654.052 kb on - strand, within BBR_RS12935 at 654.052 kb on - strand, within BBR_RS12935 at 654.084 kb on - strand, within BBR_RS12935 at 654.110 kb on - strand, within BBR_RS12935 at 654.123 kb on + strand, within BBR_RS12935 at 654.124 kb on + strand, within BBR_RS12935 at 654.124 kb on - strand, within BBR_RS12935 at 654.147 kb on + strand, within BBR_RS12935 at 654.147 kb on + strand, within BBR_RS12935 at 654.161 kb on + strand, within BBR_RS12935 at 654.190 kb on + strand, within BBR_RS12935 at 654.195 kb on + strand, within BBR_RS12935 at 654.195 kb on - strand, within BBR_RS12935 at 654.226 kb on - strand, within BBR_RS12935 at 654.240 kb on - strand, within BBR_RS12935 at 654.245 kb on + strand, within BBR_RS12935 at 654.260 kb on - strand, within BBR_RS12935 at 654.260 kb on - strand, within BBR_RS12935 at 654.262 kb on + strand, within BBR_RS12935 at 654.270 kb on - strand, within BBR_RS12935 at 654.312 kb on + strand, within BBR_RS12935 at 654.332 kb on + strand, within BBR_RS12935 at 654.332 kb on + strand, within BBR_RS12935 at 654.369 kb on + strand, within BBR_RS12935 at 654.377 kb on + strand, within BBR_RS12935 at 654.382 kb on + strand, within BBR_RS12935 at 654.387 kb on + strand, within BBR_RS12935 at 654.417 kb on - strand, within BBR_RS12935 at 654.480 kb on - strand at 654.535 kb on - strand at 654.539 kb on + strand at 654.555 kb on + strand at 654.577 kb on + strand at 654.577 kb on + strand at 654.577 kb on + strand at 654.577 kb on + strand at 654.577 kb on + strand at 654.577 kb on + strand at 654.585 kb on - strand at 654.585 kb on - strand at 654.585 kb on - strand at 654.585 kb on - strand at 654.587 kb on - strand at 654.587 kb on - strand at 654.587 kb on - strand at 654.611 kb on - strand at 654.611 kb on - strand at 654.620 kb on - strand at 654.620 kb on - strand at 654.626 kb on - strand at 654.631 kb on + strand at 654.703 kb on + strand at 654.718 kb on - strand at 654.720 kb on - strand at 654.722 kb on + strand at 654.727 kb on + strand at 654.727 kb on + strand at 654.727 kb on + strand at 654.728 kb on - strand at 654.735 kb on - strand at 654.740 kb on - strand at 654.772 kb on + strand at 654.800 kb on - strand at 654.853 kb on + strand at 654.897 kb on + strand at 654.932 kb on + strand at 654.949 kb on + strand at 654.968 kb on + strand at 655.004 kb on - strand at 655.028 kb on - strand, within BBR_RS12940 at 655.039 kb on + strand, within BBR_RS12940 at 655.052 kb on - strand, within BBR_RS12940 at 655.052 kb on - strand, within BBR_RS12940 at 655.065 kb on - strand, within BBR_RS12940 at 655.065 kb on - strand, within BBR_RS12940 at 655.082 kb on - strand, within BBR_RS12940 at 655.094 kb on + strand, within BBR_RS12940 at 655.143 kb on + strand, within BBR_RS12940 at 655.145 kb on + strand, within BBR_RS12940 at 655.145 kb on + strand, within BBR_RS12940 at 655.153 kb on - strand, within BBR_RS12940 at 655.160 kb on + strand, within BBR_RS12940 at 655.186 kb on - strand, within BBR_RS12940 at 655.192 kb on + strand, within BBR_RS12940 at 655.215 kb on + strand, within BBR_RS12940 at 655.299 kb on + strand, within BBR_RS12940 at 655.322 kb on + strand, within BBR_RS12940 at 655.322 kb on + strand, within BBR_RS12940 at 655.330 kb on - strand, within BBR_RS12940 at 655.330 kb on - strand, within BBR_RS12940 at 655.337 kb on - strand, within BBR_RS12940 at 655.366 kb on - strand, within BBR_RS12940 at 655.369 kb on + strand, within BBR_RS12940 at 655.379 kb on + strand, within BBR_RS12940 at 655.386 kb on + strand, within BBR_RS12940 at 655.386 kb on + strand, within BBR_RS12940 at 655.435 kb on + strand, within BBR_RS12940 at 655.455 kb on + strand, within BBR_RS12940 at 655.458 kb on - strand, within BBR_RS12940 at 655.463 kb on - strand, within BBR_RS12940 at 655.463 kb on - strand, within BBR_RS12940 at 655.468 kb on + strand, within BBR_RS12940 at 655.493 kb on + strand at 655.513 kb on + strand at 655.522 kb on - strand at 655.556 kb on - strand at 655.557 kb on + strand at 655.557 kb on + strand at 655.562 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet remove 652,638 + +1.1 652,658 - -0.3 652,743 + +1.0 652,743 - -0.6 652,743 - -0.6 652,744 - +0.3 652,749 - +1.3 652,830 - -0.2 652,845 - -0.6 652,849 - -0.3 652,849 - +0.7 652,913 + +0.9 652,949 + +0.6 652,953 - -0.4 652,957 - +0.8 652,990 + BBR_RS12930 0.10 +0.8 652,990 + BBR_RS12930 0.10 +0.1 652,990 + BBR_RS12930 0.10 -2.3 652,990 + BBR_RS12930 0.10 +0.7 652,990 + BBR_RS12930 0.10 +1.2 652,990 + BBR_RS12930 0.10 -1.0 652,990 + BBR_RS12930 0.10 -2.0 652,990 + BBR_RS12930 0.10 -2.3 652,998 - BBR_RS12930 0.11 +0.5 652,998 - BBR_RS12930 0.11 +1.5 652,998 - BBR_RS12930 0.11 +0.5 652,998 - BBR_RS12930 0.11 +0.7 652,998 - BBR_RS12930 0.11 +2.1 652,998 - BBR_RS12930 0.11 -1.0 652,998 - BBR_RS12930 0.11 -0.5 652,998 - BBR_RS12930 0.11 +1.9 652,998 - BBR_RS12930 0.11 -0.6 652,998 - BBR_RS12930 0.11 +1.3 652,998 - BBR_RS12930 0.11 -0.1 652,998 - BBR_RS12930 0.11 -0.6 652,998 - BBR_RS12930 0.11 -1.0 653,011 + BBR_RS12930 0.13 -1.9 653,013 + BBR_RS12930 0.14 -1.6 653,032 + BBR_RS12930 0.17 -1.0 653,068 + BBR_RS12930 0.22 +3.5 653,086 + BBR_RS12930 0.25 -1.0 653,096 + BBR_RS12930 0.26 -1.0 653,096 + BBR_RS12930 0.26 +0.6 653,135 + BBR_RS12930 0.32 -0.1 653,157 - BBR_RS12930 0.35 -0.3 653,187 + BBR_RS12930 0.40 +0.8 653,199 - BBR_RS12930 0.42 -2.6 653,204 - BBR_RS12930 0.43 +1.1 653,204 - BBR_RS12930 0.43 -1.2 653,223 + BBR_RS12930 0.45 +2.5 653,225 - BBR_RS12930 0.46 +0.0 653,235 - BBR_RS12930 0.47 -1.6 653,235 - BBR_RS12930 0.47 +1.9 653,242 + BBR_RS12930 0.48 +1.1 653,243 + BBR_RS12930 0.48 +1.2 653,251 - BBR_RS12930 0.50 -0.6 653,263 + BBR_RS12930 0.51 +2.3 653,271 - BBR_RS12930 0.53 -2.0 653,276 - BBR_RS12930 0.53 +2.3 653,278 + BBR_RS12930 0.54 +2.0 653,286 - BBR_RS12930 0.55 -1.5 653,286 - BBR_RS12930 0.55 -1.6 653,286 - BBR_RS12930 0.55 +0.7 653,286 - BBR_RS12930 0.55 +1.7 653,286 - BBR_RS12930 0.55 -0.2 653,286 - BBR_RS12930 0.55 +0.7 653,368 + BBR_RS12930 0.67 +1.8 653,370 + BBR_RS12930 0.68 +0.1 653,371 - BBR_RS12930 0.68 -0.7 653,378 + BBR_RS12930 0.69 +0.6 653,378 - BBR_RS12930 0.69 -1.5 653,389 + BBR_RS12930 0.70 -1.9 653,399 - BBR_RS12930 0.72 +3.5 653,421 + BBR_RS12930 0.75 +1.7 653,429 + BBR_RS12930 0.76 +1.6 653,451 + BBR_RS12930 0.80 +0.1 653,459 - BBR_RS12930 0.81 +2.1 653,483 - BBR_RS12930 0.85 -1.0 653,602 - -1.2 653,605 + +0.1 653,639 + -0.7 653,639 + -0.6 653,639 - +1.4 653,643 + -1.3 653,651 - +2.9 653,685 + -1.0 653,685 + +4.3 653,692 - -1.3 653,711 + BBR_RS12935 0.11 +1.0 653,711 + BBR_RS12935 0.11 -0.4 653,715 + BBR_RS12935 0.11 +2.4 653,736 + BBR_RS12935 0.14 -2.4 653,736 + BBR_RS12935 0.14 -0.9 653,780 + BBR_RS12935 0.18 -0.9 653,780 + BBR_RS12935 0.18 +0.1 653,787 + BBR_RS12935 0.19 +1.5 653,788 - BBR_RS12935 0.19 -0.1 653,788 - BBR_RS12935 0.19 -1.4 653,788 - BBR_RS12935 0.19 -0.4 653,797 - BBR_RS12935 0.20 +2.7 653,797 - BBR_RS12935 0.20 +1.2 653,809 + BBR_RS12935 0.21 +2.2 653,809 + BBR_RS12935 0.21 +0.1 653,809 + BBR_RS12935 0.21 -0.1 653,816 - BBR_RS12935 0.22 -0.2 653,816 - BBR_RS12935 0.22 +0.2 653,816 - BBR_RS12935 0.22 +0.6 653,818 + BBR_RS12935 0.22 -2.0 653,826 - BBR_RS12935 0.23 +0.6 653,826 - BBR_RS12935 0.23 +1.3 653,916 + BBR_RS12935 0.32 +0.1 653,916 + BBR_RS12935 0.32 +0.7 653,916 + BBR_RS12935 0.32 +1.6 653,930 - BBR_RS12935 0.34 -0.5 653,946 + BBR_RS12935 0.35 +1.6 653,959 - BBR_RS12935 0.37 -0.8 653,963 + BBR_RS12935 0.37 -1.5 653,966 - BBR_RS12935 0.37 +0.2 653,977 + BBR_RS12935 0.39 +0.6 653,977 + BBR_RS12935 0.39 -0.2 653,977 + BBR_RS12935 0.39 -0.7 653,977 + BBR_RS12935 0.39 +1.1 653,977 + BBR_RS12935 0.39 +0.7 653,977 + BBR_RS12935 0.39 -1.6 653,985 - BBR_RS12935 0.39 +0.3 653,985 - BBR_RS12935 0.39 -0.3 654,052 - BBR_RS12935 0.46 -1.4 654,052 - BBR_RS12935 0.46 +0.7 654,084 - BBR_RS12935 0.50 +1.1 654,110 - BBR_RS12935 0.52 +2.9 654,123 + BBR_RS12935 0.54 +1.1 654,124 + BBR_RS12935 0.54 -0.6 654,124 - BBR_RS12935 0.54 -1.1 654,147 + BBR_RS12935 0.56 +1.3 654,147 + BBR_RS12935 0.56 -0.3 654,161 + BBR_RS12935 0.58 +4.2 654,190 + BBR_RS12935 0.61 +0.3 654,195 + BBR_RS12935 0.61 +0.4 654,195 - BBR_RS12935 0.61 -1.1 654,226 - BBR_RS12935 0.64 +0.4 654,240 - BBR_RS12935 0.66 +0.8 654,245 + BBR_RS12935 0.66 -0.3 654,260 - BBR_RS12935 0.68 +3.9 654,260 - BBR_RS12935 0.68 +2.0 654,262 + BBR_RS12935 0.68 +2.5 654,270 - BBR_RS12935 0.69 +0.3 654,312 + BBR_RS12935 0.73 -0.8 654,332 + BBR_RS12935 0.75 +1.9 654,332 + BBR_RS12935 0.75 -0.3 654,369 + BBR_RS12935 0.79 +0.5 654,377 + BBR_RS12935 0.80 -0.4 654,382 + BBR_RS12935 0.81 +1.4 654,387 + BBR_RS12935 0.81 +1.1 654,417 - BBR_RS12935 0.84 -0.8 654,480 - -0.1 654,535 - +1.9 654,539 + -1.0 654,555 + +2.9 654,577 + -1.1 654,577 + +0.1 654,577 + -0.8 654,577 + -2.2 654,577 + -1.1 654,577 + +1.1 654,585 - -2.2 654,585 - +0.1 654,585 - +1.2 654,585 - +0.5 654,587 - +1.2 654,587 - -0.4 654,587 - -1.1 654,611 - -0.5 654,611 - -1.4 654,620 - -0.8 654,620 - -0.1 654,626 - +3.0 654,631 + -1.5 654,703 + -1.2 654,718 - -0.4 654,720 - -0.7 654,722 + -1.2 654,727 + +4.0 654,727 + +0.2 654,727 + +0.7 654,728 - -0.2 654,735 - +0.9 654,740 - +1.9 654,772 + +1.9 654,800 - -0.1 654,853 + +0.7 654,897 + +2.3 654,932 + -1.1 654,949 + -0.5 654,968 + +2.9 655,004 - +2.3 655,028 - BBR_RS12940 0.10 +2.3 655,039 + BBR_RS12940 0.12 +3.3 655,052 - BBR_RS12940 0.14 -0.2 655,052 - BBR_RS12940 0.14 +2.2 655,065 - BBR_RS12940 0.17 -0.1 655,065 - BBR_RS12940 0.17 +0.6 655,082 - BBR_RS12940 0.20 +5.2 655,094 + BBR_RS12940 0.22 -0.5 655,143 + BBR_RS12940 0.30 +2.5 655,145 + BBR_RS12940 0.30 +0.5 655,145 + BBR_RS12940 0.30 +2.1 655,153 - BBR_RS12940 0.32 +3.1 655,160 + BBR_RS12940 0.33 +3.0 655,186 - BBR_RS12940 0.37 +0.8 655,192 + BBR_RS12940 0.38 +1.5 655,215 + BBR_RS12940 0.42 +0.1 655,299 + BBR_RS12940 0.57 +0.9 655,322 + BBR_RS12940 0.61 -0.5 655,322 + BBR_RS12940 0.61 -0.2 655,330 - BBR_RS12940 0.62 +1.0 655,330 - BBR_RS12940 0.62 +1.3 655,337 - BBR_RS12940 0.63 +3.1 655,366 - BBR_RS12940 0.68 +1.3 655,369 + BBR_RS12940 0.69 +4.0 655,379 + BBR_RS12940 0.71 +0.3 655,386 + BBR_RS12940 0.72 +2.3 655,386 + BBR_RS12940 0.72 -0.3 655,435 + BBR_RS12940 0.80 +3.7 655,455 + BBR_RS12940 0.84 +0.6 655,458 - BBR_RS12940 0.84 -0.3 655,463 - BBR_RS12940 0.85 +0.3 655,463 - BBR_RS12940 0.85 +0.6 655,468 + BBR_RS12940 0.86 -0.2 655,493 + +0.8 655,513 + -0.2 655,522 - +2.3 655,556 - +0.2 655,557 + +1.8 655,557 + -0.5 655,562 + +0.9
Or see this region's nucleotide sequence