Experiment: Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0246 and ntrX are separated by 362 nucleotides ntrX and DVU0248 are separated by 9 nucleotides
DVU0246: DVU0246 - pyruvate phosphate dikinase, PEP/pyruvate binding domain protein (TIGR), at 278,347 to 280,581
DVU0246
DVU0247: ntrX - response regulator (TIGR), at 280,944 to 281,303
ntrX
DVU0248: DVU0248 - sensory box histidine kinase, authentic point mutation (TIGR), at 281,313 to 283,421
DVU0248
Position (kb) 280
281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 279.973 kb on - strand, within DVU0246 at 279.983 kb on - strand, within DVU0246 at 279.983 kb on - strand, within DVU0246 at 280.015 kb on + strand, within DVU0246 at 280.026 kb on + strand, within DVU0246 at 280.028 kb on + strand, within DVU0246 at 280.040 kb on + strand, within DVU0246 at 280.093 kb on + strand, within DVU0246 at 280.093 kb on + strand, within DVU0246 at 280.116 kb on - strand, within DVU0246 at 280.157 kb on + strand, within DVU0246 at 280.165 kb on - strand, within DVU0246 at 280.167 kb on + strand, within DVU0246 at 280.168 kb on - strand, within DVU0246 at 280.181 kb on + strand, within DVU0246 at 280.201 kb on - strand, within DVU0246 at 280.201 kb on - strand, within DVU0246 at 280.238 kb on + strand, within DVU0246 at 280.245 kb on + strand, within DVU0246 at 280.282 kb on - strand, within DVU0246 at 280.326 kb on - strand, within DVU0246 at 280.341 kb on + strand, within DVU0246 at 280.360 kb on - strand at 280.365 kb on + strand at 280.419 kb on - strand at 280.419 kb on - strand at 280.464 kb on - strand at 280.573 kb on + strand at 280.581 kb on - strand at 280.593 kb on - strand at 280.611 kb on + strand at 280.649 kb on - strand at 280.670 kb on - strand at 280.670 kb on - strand at 280.702 kb on + strand at 280.720 kb on + strand at 280.767 kb on - strand at 280.814 kb on - strand at 280.814 kb on - strand at 280.825 kb on - strand at 280.869 kb on - strand at 280.902 kb on + strand at 280.921 kb on + strand at 280.978 kb on + strand at 280.997 kb on + strand, within ntrX at 281.007 kb on + strand, within ntrX at 281.084 kb on + strand, within ntrX at 281.089 kb on + strand, within ntrX at 281.097 kb on - strand, within ntrX at 281.125 kb on - strand, within ntrX at 281.125 kb on - strand, within ntrX at 281.228 kb on - strand, within ntrX at 281.263 kb on + strand, within ntrX at 281.312 kb on - strand at 281.432 kb on + strand at 281.482 kb on + strand at 281.520 kb on + strand at 281.520 kb on + strand at 281.533 kb on - strand, within DVU0248 at 281.624 kb on - strand, within DVU0248 at 281.934 kb on + strand, within DVU0248 at 281.976 kb on - strand, within DVU0248 at 281.976 kb on - strand, within DVU0248 at 281.977 kb on + strand, within DVU0248 at 282.003 kb on + strand, within DVU0248 at 282.015 kb on + strand, within DVU0248 at 282.133 kb on + strand, within DVU0248 at 282.133 kb on + strand, within DVU0248 at 282.172 kb on - strand, within DVU0248 at 282.179 kb on + strand, within DVU0248 at 282.188 kb on + strand, within DVU0248 at 282.210 kb on - strand, within DVU0248 at 282.303 kb on - strand, within DVU0248
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM) remove 279,973 - DVU0246 0.73 -0.6 279,983 - DVU0246 0.73 -1.2 279,983 - DVU0246 0.73 -0.4 280,015 + DVU0246 0.75 -1.0 280,026 + DVU0246 0.75 -0.5 280,028 + DVU0246 0.75 -0.6 280,040 + DVU0246 0.76 -1.0 280,093 + DVU0246 0.78 -0.5 280,093 + DVU0246 0.78 -0.4 280,116 - DVU0246 0.79 -0.5 280,157 + DVU0246 0.81 -0.4 280,165 - DVU0246 0.81 -2.0 280,167 + DVU0246 0.81 -1.7 280,168 - DVU0246 0.81 -0.6 280,181 + DVU0246 0.82 -0.0 280,201 - DVU0246 0.83 -1.3 280,201 - DVU0246 0.83 -0.6 280,238 + DVU0246 0.85 -0.4 280,245 + DVU0246 0.85 -0.2 280,282 - DVU0246 0.87 +0.6 280,326 - DVU0246 0.89 -0.4 280,341 + DVU0246 0.89 +0.6 280,360 - -0.8 280,365 + -0.3 280,419 - +0.0 280,419 - +0.6 280,464 - +0.1 280,573 + -0.1 280,581 - -0.5 280,593 - -0.1 280,611 + +0.1 280,649 - -0.5 280,670 - -0.5 280,670 - -0.5 280,702 + -0.5 280,720 + -0.3 280,767 - +1.5 280,814 - -1.5 280,814 - -0.0 280,825 - -0.6 280,869 - -0.7 280,902 + +0.1 280,921 + -0.3 280,978 + -0.4 280,997 + ntrX DVU0247 0.15 -0.5 281,007 + ntrX DVU0247 0.17 -0.7 281,084 + ntrX DVU0247 0.39 -1.9 281,089 + ntrX DVU0247 0.40 -1.0 281,097 - ntrX DVU0247 0.42 -0.7 281,125 - ntrX DVU0247 0.50 +0.4 281,125 - ntrX DVU0247 0.50 -0.4 281,228 - ntrX DVU0247 0.79 -0.5 281,263 + ntrX DVU0247 0.89 -0.8 281,312 - +0.3 281,432 + -2.8 281,482 + -0.5 281,520 + -1.1 281,520 + -0.1 281,533 - DVU0248 0.10 -0.6 281,624 - DVU0248 0.15 +0.0 281,934 + DVU0248 0.29 -1.7 281,976 - DVU0248 0.31 -0.2 281,976 - DVU0248 0.31 -1.6 281,977 + DVU0248 0.31 -0.1 282,003 + DVU0248 0.33 -0.5 282,015 + DVU0248 0.33 -3.6 282,133 + DVU0248 0.39 -0.6 282,133 + DVU0248 0.39 +1.1 282,172 - DVU0248 0.41 -0.4 282,179 + DVU0248 0.41 -0.6 282,188 + DVU0248 0.41 -0.3 282,210 - DVU0248 0.43 -0.3 282,303 - DVU0248 0.47 +0.4
Or see this region's nucleotide sequence