Experiment: Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phsB and phsA are separated by 9 nucleotides phsA and DVU0174 are separated by 82 nucleotides DVU0174 and DVU0175 are separated by 476 nucleotides
DVU0172: phsB - thiosulfate reductase (phsB) (Shelley Haveman), at 215,484 to 216,485
phsB
DVU0173: phsA - thiosulfate reductase (Shelley Haveman), at 216,495 to 218,591
phsA
DVU0174: DVU0174 - hypothetical protein (TIGR), at 218,674 to 218,781
DVU0174
DVU0175: DVU0175 - tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein (TIGR), at 219,258 to 220,889
DVU0175
Position (kb) 216
217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 215.518 kb on - strand at 215.555 kb on + strand at 215.563 kb on - strand at 215.578 kb on + strand at 215.586 kb on - strand, within phsB at 215.627 kb on + strand, within phsB at 215.635 kb on - strand, within phsB at 215.674 kb on + strand, within phsB at 215.676 kb on + strand, within phsB at 215.747 kb on + strand, within phsB at 215.815 kb on - strand, within phsB at 215.822 kb on - strand, within phsB at 215.841 kb on - strand, within phsB at 215.879 kb on + strand, within phsB at 215.884 kb on - strand, within phsB at 215.887 kb on - strand, within phsB at 216.021 kb on + strand, within phsB at 216.021 kb on + strand, within phsB at 216.021 kb on + strand, within phsB at 216.031 kb on + strand, within phsB at 216.053 kb on + strand, within phsB at 216.053 kb on + strand, within phsB at 216.183 kb on + strand, within phsB at 216.280 kb on + strand, within phsB at 216.367 kb on - strand, within phsB at 216.405 kb on + strand at 216.405 kb on + strand at 216.417 kb on + strand at 216.434 kb on + strand at 216.434 kb on + strand at 216.442 kb on - strand at 216.461 kb on - strand at 216.516 kb on - strand at 216.569 kb on - strand at 216.569 kb on - strand at 216.591 kb on + strand at 216.689 kb on - strand at 216.691 kb on - strand at 216.703 kb on + strand at 216.740 kb on + strand, within phsA at 216.762 kb on + strand, within phsA at 216.775 kb on - strand, within phsA at 216.841 kb on + strand, within phsA at 216.855 kb on + strand, within phsA at 216.877 kb on - strand, within phsA at 216.943 kb on + strand, within phsA at 216.975 kb on - strand, within phsA at 216.990 kb on + strand, within phsA at 217.010 kb on - strand, within phsA at 217.116 kb on - strand, within phsA at 217.149 kb on + strand, within phsA at 217.275 kb on - strand, within phsA at 217.295 kb on - strand, within phsA at 217.430 kb on - strand, within phsA at 217.431 kb on - strand, within phsA at 217.452 kb on + strand, within phsA at 217.707 kb on + strand, within phsA at 217.739 kb on - strand, within phsA at 217.798 kb on + strand, within phsA at 217.823 kb on - strand, within phsA at 217.842 kb on - strand, within phsA at 217.844 kb on + strand, within phsA at 217.897 kb on - strand, within phsA at 217.923 kb on + strand, within phsA at 217.947 kb on - strand, within phsA at 218.044 kb on + strand, within phsA at 218.044 kb on + strand, within phsA at 218.052 kb on - strand, within phsA at 218.057 kb on - strand, within phsA at 218.062 kb on - strand, within phsA at 218.093 kb on - strand, within phsA at 218.118 kb on + strand, within phsA at 218.126 kb on - strand, within phsA at 218.216 kb on + strand, within phsA at 218.224 kb on - strand, within phsA at 218.243 kb on - strand, within phsA at 218.262 kb on + strand, within phsA at 218.389 kb on + strand at 218.468 kb on - strand at 218.477 kb on - strand at 218.485 kb on + strand at 218.493 kb on - strand at 218.524 kb on - strand at 218.531 kb on + strand at 218.539 kb on - strand at 218.539 kb on - strand at 218.607 kb on + strand at 218.609 kb on + strand at 218.617 kb on - strand at 218.639 kb on + strand at 218.648 kb on + strand at 218.681 kb on - strand at 218.683 kb on + strand at 218.688 kb on + strand, within DVU0174 at 218.693 kb on + strand, within DVU0174 at 218.696 kb on - strand, within DVU0174 at 218.698 kb on + strand, within DVU0174 at 218.698 kb on + strand, within DVU0174 at 218.713 kb on - strand, within DVU0174 at 218.933 kb on + strand at 218.948 kb on + strand at 218.953 kb on + strand at 218.953 kb on + strand at 218.961 kb on - strand at 218.997 kb on + strand at 219.000 kb on - strand at 219.035 kb on - strand at 219.037 kb on - strand at 219.038 kb on + strand at 219.130 kb on + strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.264 kb on - strand at 219.279 kb on + strand at 219.330 kb on - strand at 219.338 kb on + strand at 219.386 kb on + strand at 219.387 kb on + strand at 219.395 kb on - strand at 219.430 kb on + strand, within DVU0175 at 219.430 kb on + strand, within DVU0175 at 219.438 kb on - strand, within DVU0175 at 219.472 kb on + strand, within DVU0175 at 219.472 kb on + strand, within DVU0175 at 219.512 kb on + strand, within DVU0175 at 219.582 kb on - strand, within DVU0175
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM) remove 215,518 - -0.7 215,555 + -0.6 215,563 - -0.7 215,578 + -0.9 215,586 - phsB DVU0172 0.10 +0.4 215,627 + phsB DVU0172 0.14 -1.2 215,635 - phsB DVU0172 0.15 -0.6 215,674 + phsB DVU0172 0.19 -1.0 215,676 + phsB DVU0172 0.19 +0.2 215,747 + phsB DVU0172 0.26 -0.8 215,815 - phsB DVU0172 0.33 -0.9 215,822 - phsB DVU0172 0.34 -0.8 215,841 - phsB DVU0172 0.36 -0.9 215,879 + phsB DVU0172 0.39 -0.9 215,884 - phsB DVU0172 0.40 -1.0 215,887 - phsB DVU0172 0.40 -0.9 216,021 + phsB DVU0172 0.54 -1.0 216,021 + phsB DVU0172 0.54 -0.3 216,021 + phsB DVU0172 0.54 -1.9 216,031 + phsB DVU0172 0.55 -0.0 216,053 + phsB DVU0172 0.57 -0.8 216,053 + phsB DVU0172 0.57 -1.0 216,183 + phsB DVU0172 0.70 -1.3 216,280 + phsB DVU0172 0.79 -1.4 216,367 - phsB DVU0172 0.88 -2.2 216,405 + -1.4 216,405 + -0.9 216,417 + +0.2 216,434 + -0.7 216,434 + -1.0 216,442 - -1.9 216,461 - -0.9 216,516 - +1.6 216,569 - -1.6 216,569 - -0.8 216,591 + -0.9 216,689 - -0.9 216,691 - -1.5 216,703 + -1.0 216,740 + phsA DVU0173 0.12 -0.5 216,762 + phsA DVU0173 0.13 -0.3 216,775 - phsA DVU0173 0.13 -0.8 216,841 + phsA DVU0173 0.16 -0.7 216,855 + phsA DVU0173 0.17 -0.7 216,877 - phsA DVU0173 0.18 -0.4 216,943 + phsA DVU0173 0.21 -0.7 216,975 - phsA DVU0173 0.23 -1.1 216,990 + phsA DVU0173 0.24 -0.5 217,010 - phsA DVU0173 0.25 -1.0 217,116 - phsA DVU0173 0.30 -1.3 217,149 + phsA DVU0173 0.31 -1.0 217,275 - phsA DVU0173 0.37 -0.8 217,295 - phsA DVU0173 0.38 -0.3 217,430 - phsA DVU0173 0.45 -1.0 217,431 - phsA DVU0173 0.45 -1.0 217,452 + phsA DVU0173 0.46 -1.1 217,707 + phsA DVU0173 0.58 -0.7 217,739 - phsA DVU0173 0.59 -0.7 217,798 + phsA DVU0173 0.62 -0.6 217,823 - phsA DVU0173 0.63 -0.9 217,842 - phsA DVU0173 0.64 -0.4 217,844 + phsA DVU0173 0.64 -1.6 217,897 - phsA DVU0173 0.67 -2.3 217,923 + phsA DVU0173 0.68 -0.8 217,947 - phsA DVU0173 0.69 -2.5 218,044 + phsA DVU0173 0.74 -0.7 218,044 + phsA DVU0173 0.74 -0.8 218,052 - phsA DVU0173 0.74 -1.2 218,057 - phsA DVU0173 0.74 -2.1 218,062 - phsA DVU0173 0.75 -1.6 218,093 - phsA DVU0173 0.76 -1.3 218,118 + phsA DVU0173 0.77 -0.9 218,126 - phsA DVU0173 0.78 -1.8 218,216 + phsA DVU0173 0.82 +0.6 218,224 - phsA DVU0173 0.82 +0.1 218,243 - phsA DVU0173 0.83 -0.4 218,262 + phsA DVU0173 0.84 -1.0 218,389 + -0.8 218,468 - -0.9 218,477 - -0.8 218,485 + -0.9 218,493 - -0.8 218,524 - -0.8 218,531 + -1.0 218,539 - -1.2 218,539 - -2.1 218,607 + +0.7 218,609 + -0.1 218,617 - +0.1 218,639 + -2.5 218,648 + -0.1 218,681 - -0.1 218,683 + -0.1 218,688 + DVU0174 0.13 +4.1 218,693 + DVU0174 0.18 -1.0 218,696 - DVU0174 0.20 +0.6 218,698 + DVU0174 0.22 -0.8 218,698 + DVU0174 0.22 -0.3 218,713 - DVU0174 0.36 -0.9 218,933 + +0.4 218,948 + +0.2 218,953 + -0.0 218,953 + -0.4 218,961 - -0.4 218,997 + -0.0 219,000 - -0.2 219,035 - +0.8 219,037 - -0.0 219,038 + +0.1 219,130 + -0.2 219,264 - -0.2 219,264 - -0.5 219,264 - -0.1 219,264 - +0.5 219,279 + -0.8 219,330 - -0.4 219,338 + -0.4 219,386 + -0.9 219,387 + -1.4 219,395 - -1.3 219,430 + DVU0175 0.11 -0.8 219,430 + DVU0175 0.11 -1.0 219,438 - DVU0175 0.11 -0.7 219,472 + DVU0175 0.13 -1.1 219,472 + DVU0175 0.13 -0.7 219,512 + DVU0175 0.16 -0.9 219,582 - DVU0175 0.20 -0.9
Or see this region's nucleotide sequence