Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3086

Experiment: Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM)
3,226,327	-				-0.4
3,226,344	-				-1.0
3,226,509	+				-1.6
3,226,987	-				-0.3
3,227,012	-				-0.9
3,227,012	-				-0.2
3,227,012	-				-1.6
3,227,012	-				-0.2
3,227,014	-				-0.3
3,227,038	-				+0.0
3,227,046	-				+1.2
3,227,064	+				-0.5
3,227,067	-				-0.2
3,227,067	-				-0.1
3,227,161	+		DVU3085	0.35	-0.0
3,227,174	-		DVU3085	0.41	-0.6
3,227,306	+				+0.5
3,227,326	+				+2.0
3,227,344	-				-0.1
3,227,350	-				+0.5
3,227,397	+				-0.2
3,227,454	-				-0.2
3,227,461	+				-0.1
3,227,552	-	cobB-2	DVU3086	0.13	-0.3
3,227,568	+	cobB-2	DVU3086	0.14	+0.6
3,227,583	+	cobB-2	DVU3086	0.15	-0.4
3,227,663	+	cobB-2	DVU3086	0.19	+0.4
3,227,665	+	cobB-2	DVU3086	0.19	+0.5
3,227,675	+	cobB-2	DVU3086	0.20	+0.4
3,227,675	+	cobB-2	DVU3086	0.20	+0.7
3,227,675	+	cobB-2	DVU3086	0.20	-0.6
3,227,683	-	cobB-2	DVU3086	0.20	-0.1
3,227,683	-	cobB-2	DVU3086	0.20	-1.1
3,227,683	-	cobB-2	DVU3086	0.20	+0.6
3,227,708	+	cobB-2	DVU3086	0.22	+0.4
3,227,761	-	cobB-2	DVU3086	0.25	-0.6
3,227,766	-	cobB-2	DVU3086	0.25	-0.6
3,227,785	+	cobB-2	DVU3086	0.26	+0.6
3,227,874	+	cobB-2	DVU3086	0.31	-0.5
3,227,994	-	cobB-2	DVU3086	0.37	+3.2
3,227,996	+	cobB-2	DVU3086	0.38	-0.4
3,228,004	-	cobB-2	DVU3086	0.38	+0.1
3,228,027	-	cobB-2	DVU3086	0.39	-0.6
3,228,056	-	cobB-2	DVU3086	0.41	+0.1
3,228,092	+	cobB-2	DVU3086	0.43	-0.9
3,228,097	+	cobB-2	DVU3086	0.43	-1.4
3,228,124	+	cobB-2	DVU3086	0.45	+0.1
3,228,134	+	cobB-2	DVU3086	0.45	-1.0
3,228,142	-	cobB-2	DVU3086	0.46	+0.1
3,228,215	-	cobB-2	DVU3086	0.50	-0.8
3,228,238	+	cobB-2	DVU3086	0.51	-0.2
3,228,246	-	cobB-2	DVU3086	0.51	+0.2
3,228,246	-	cobB-2	DVU3086	0.51	-0.4
3,228,283	-	cobB-2	DVU3086	0.53	-0.3
3,228,285	+	cobB-2	DVU3086	0.53	+0.0
3,228,300	-	cobB-2	DVU3086	0.54	-0.4
3,228,300	-	cobB-2	DVU3086	0.54	-0.5
3,228,486	-	cobB-2	DVU3086	0.64	-0.2
3,228,523	-	cobB-2	DVU3086	0.66	+1.1
3,228,563	+	cobB-2	DVU3086	0.69	+0.9
3,228,571	-	cobB-2	DVU3086	0.69	-0.1
3,228,580	+	cobB-2	DVU3086	0.70	-0.5
3,228,618	+	cobB-2	DVU3086	0.72	-0.0
3,228,634	+	cobB-2	DVU3086	0.72	-1.9
3,228,650	-	cobB-2	DVU3086	0.73	+0.2
3,228,706	+	cobB-2	DVU3086	0.76	+0.3
3,228,804	+	cobB-2	DVU3086	0.82	-0.5
3,228,876	-	cobB-2	DVU3086	0.86	+0.1
3,228,910	-	cobB-2	DVU3086	0.88	-0.9
3,228,910	-	cobB-2	DVU3086	0.88	+0.9
3,228,910	-	cobB-2	DVU3086	0.88	+3.9
3,228,910	-	cobB-2	DVU3086	0.88	-0.9
3,228,918	+	cobB-2	DVU3086	0.88	+0.5
3,228,921	+	cobB-2	DVU3086	0.88	+0.0
3,228,983	+				+0.1
3,228,991	-				+0.1
3,229,020	+				-0.4
3,229,020	+				-1.3
3,229,020	+				-1.9
3,229,104	-				-0.5
3,229,118	+				+0.8
3,229,128	+				-0.2
3,229,153	+				-0.1
3,229,276	-	cobH	DVU3087	0.21	-0.4
3,229,281	-	cobH	DVU3087	0.21	-0.5
3,229,281	-	cobH	DVU3087	0.21	+4.2
3,229,281	-	cobH	DVU3087	0.21	-0.2
3,229,312	+	cobH	DVU3087	0.26	-0.1
3,229,312	+	cobH	DVU3087	0.26	-0.4
3,229,408	-	cobH	DVU3087	0.41	+0.4
3,229,423	+	cobH	DVU3087	0.43	+0.3
3,229,489	+	cobH	DVU3087	0.54	-1.0
3,229,579	-	cobH	DVU3087	0.68	+0.1
3,229,604	-	cobH	DVU3087	0.72	+0.3
3,229,610	+	cobH	DVU3087	0.73	-1.6
3,229,613	-	cobH	DVU3087	0.73	-1.2
3,229,618	-	cobH	DVU3087	0.74	-0.6
3,229,647	-	cobH	DVU3087	0.78	+0.2
3,229,691	+	cobH	DVU3087	0.85	+1.1
3,229,691	+	cobH	DVU3087	0.85	+0.0
3,229,694	-	cobH	DVU3087	0.86	-0.0
3,229,852	+				-0.7
3,229,859	-				+1.0
3,229,898	+				-0.8
3,229,966	+				-0.5
3,230,011	-				-0.5
3,230,044	+				-0.4
3,230,059	+				-0.4
3,230,092	+	deaD	DVU3088	0.11	-0.4
3,230,093	-	deaD	DVU3088	0.11	-0.4
3,230,097	+	deaD	DVU3088	0.12	-0.4
3,230,100	-	deaD	DVU3088	0.12	+0.3