Experiment: Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1919 and hynB-1 are separated by 317 nucleotides hynB-1 and hynA-1 are separated by 51 nucleotides
DVU1919: DVU1919 - hydrogenase expression/formation protein, putative (TIGR), at 1,993,855 to 1,994,325
DVU1919
DVU1921: hynB-1 - periplasmic [NiFe] hydrogenase, small subunit, isozyme 1 (TIGR), at 1,994,643 to 1,995,596
hynB-1
DVU1922: hynA-1 - periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 (TIGR), at 1,995,648 to 1,997,348
hynA-1
Position (kb) 1994
1995
1996 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1993.711 kb on + strand at 1993.729 kb on + strand at 1993.768 kb on + strand at 1993.814 kb on + strand at 1993.959 kb on + strand, within DVU1919 at 1994.069 kb on - strand, within DVU1919 at 1994.184 kb on - strand, within DVU1919 at 1994.823 kb on + strand, within hynB-1 at 1994.828 kb on + strand, within hynB-1 at 1994.851 kb on + strand, within hynB-1 at 1994.859 kb on - strand, within hynB-1 at 1995.072 kb on + strand, within hynB-1 at 1995.104 kb on + strand, within hynB-1 at 1995.104 kb on + strand, within hynB-1 at 1995.113 kb on - strand, within hynB-1 at 1995.159 kb on + strand, within hynB-1 at 1995.169 kb on + strand, within hynB-1 at 1995.186 kb on - strand, within hynB-1 at 1995.460 kb on - strand, within hynB-1 at 1995.499 kb on - strand, within hynB-1 at 1995.509 kb on + strand at 1995.533 kb on + strand at 1995.541 kb on - strand at 1995.670 kb on - strand at 1995.711 kb on - strand at 1995.737 kb on - strand at 1995.785 kb on + strand at 1995.793 kb on - strand at 1995.793 kb on - strand at 1995.815 kb on + strand at 1995.832 kb on - strand, within hynA-1 at 1995.866 kb on + strand, within hynA-1 at 1995.868 kb on + strand, within hynA-1 at 1995.901 kb on - strand, within hynA-1 at 1996.035 kb on - strand, within hynA-1 at 1996.085 kb on + strand, within hynA-1 at 1996.085 kb on + strand, within hynA-1 at 1996.092 kb on + strand, within hynA-1 at 1996.134 kb on - strand, within hynA-1 at 1996.150 kb on - strand, within hynA-1 at 1996.150 kb on - strand, within hynA-1 at 1996.150 kb on - strand, within hynA-1 at 1996.157 kb on + strand, within hynA-1 at 1996.165 kb on - strand, within hynA-1 at 1996.170 kb on - strand, within hynA-1 at 1996.287 kb on - strand, within hynA-1 at 1996.301 kb on + strand, within hynA-1 at 1996.309 kb on - strand, within hynA-1 at 1996.309 kb on - strand, within hynA-1 at 1996.345 kb on + strand, within hynA-1 at 1996.372 kb on - strand, within hynA-1 at 1996.404 kb on - strand, within hynA-1 at 1996.424 kb on + strand, within hynA-1 at 1996.436 kb on + strand, within hynA-1 at 1996.458 kb on + strand, within hynA-1 at 1996.499 kb on + strand, within hynA-1 at 1996.499 kb on + strand, within hynA-1 at 1996.504 kb on + strand, within hynA-1 at 1996.507 kb on - strand, within hynA-1 at 1996.509 kb on + strand, within hynA-1 at 1996.517 kb on - strand, within hynA-1 at 1996.529 kb on + strand, within hynA-1
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM) remove 1,993,711 + -1.4 1,993,729 + -0.4 1,993,768 + -0.6 1,993,814 + +0.1 1,993,959 + DVU1919 0.22 +0.4 1,994,069 - DVU1919 0.45 +0.4 1,994,184 - DVU1919 0.70 +0.4 1,994,823 + hynB-1 DVU1921 0.19 +0.1 1,994,828 + hynB-1 DVU1921 0.19 +0.1 1,994,851 + hynB-1 DVU1921 0.22 +0.6 1,994,859 - hynB-1 DVU1921 0.23 -0.2 1,995,072 + hynB-1 DVU1921 0.45 +0.1 1,995,104 + hynB-1 DVU1921 0.48 +0.1 1,995,104 + hynB-1 DVU1921 0.48 +0.2 1,995,113 - hynB-1 DVU1921 0.49 +0.6 1,995,159 + hynB-1 DVU1921 0.54 -0.6 1,995,169 + hynB-1 DVU1921 0.55 -0.1 1,995,186 - hynB-1 DVU1921 0.57 -0.0 1,995,460 - hynB-1 DVU1921 0.86 -0.0 1,995,499 - hynB-1 DVU1921 0.90 +0.8 1,995,509 + -0.2 1,995,533 + +0.7 1,995,541 - +0.5 1,995,670 - -0.0 1,995,711 - -0.1 1,995,737 - -0.2 1,995,785 + -0.0 1,995,793 - +0.4 1,995,793 - +0.0 1,995,815 + +0.1 1,995,832 - hynA-1 DVU1922 0.11 -0.2 1,995,866 + hynA-1 DVU1922 0.13 -0.1 1,995,868 + hynA-1 DVU1922 0.13 -0.1 1,995,901 - hynA-1 DVU1922 0.15 -0.0 1,996,035 - hynA-1 DVU1922 0.23 -0.1 1,996,085 + hynA-1 DVU1922 0.26 +0.1 1,996,085 + hynA-1 DVU1922 0.26 +0.6 1,996,092 + hynA-1 DVU1922 0.26 -0.5 1,996,134 - hynA-1 DVU1922 0.29 +0.0 1,996,150 - hynA-1 DVU1922 0.30 +1.0 1,996,150 - hynA-1 DVU1922 0.30 -0.5 1,996,150 - hynA-1 DVU1922 0.30 -1.6 1,996,157 + hynA-1 DVU1922 0.30 +0.0 1,996,165 - hynA-1 DVU1922 0.30 +0.8 1,996,170 - hynA-1 DVU1922 0.31 +0.0 1,996,287 - hynA-1 DVU1922 0.38 -0.6 1,996,301 + hynA-1 DVU1922 0.38 +1.1 1,996,309 - hynA-1 DVU1922 0.39 -0.2 1,996,309 - hynA-1 DVU1922 0.39 -0.8 1,996,345 + hynA-1 DVU1922 0.41 +0.2 1,996,372 - hynA-1 DVU1922 0.43 +1.0 1,996,404 - hynA-1 DVU1922 0.44 -0.1 1,996,424 + hynA-1 DVU1922 0.46 -0.1 1,996,436 + hynA-1 DVU1922 0.46 +0.0 1,996,458 + hynA-1 DVU1922 0.48 +0.2 1,996,499 + hynA-1 DVU1922 0.50 +0.4 1,996,499 + hynA-1 DVU1922 0.50 -0.0 1,996,504 + hynA-1 DVU1922 0.50 -0.3 1,996,507 - hynA-1 DVU1922 0.50 +0.2 1,996,509 + hynA-1 DVU1922 0.51 -2.9 1,996,517 - hynA-1 DVU1922 0.51 -2.0 1,996,529 + hynA-1 DVU1922 0.52 +0.5
Or see this region's nucleotide sequence