Experiment: Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0063 and DVUA0063.1 overlap by 4 nucleotides DVUA0063.1 and DVUA0064 are separated by 67 nucleotides
DVUA0063: DVUA0063 - Orn/DAP/Arg family decarboxylase (TIGR), at 78,536 to 80,092
DVUA0063
DVUA0063.1: DVUA0063.1 - SEED: FIG00604587: hypothetical protein, at 80,089 to 81,096
DVUA0063.1
DVUA0064: DVUA0064 - conserved domain protein (TIGR), at 81,164 to 82,885
DVUA0064
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.093 kb on - strand, within DVUA0063 at 79.138 kb on - strand, within DVUA0063 at 79.160 kb on + strand, within DVUA0063 at 79.289 kb on + strand, within DVUA0063 at 79.318 kb on - strand, within DVUA0063 at 79.324 kb on + strand, within DVUA0063 at 79.449 kb on + strand, within DVUA0063 at 79.449 kb on + strand, within DVUA0063 at 79.454 kb on + strand, within DVUA0063 at 79.498 kb on - strand, within DVUA0063 at 79.535 kb on - strand, within DVUA0063 at 79.570 kb on + strand, within DVUA0063 at 79.578 kb on - strand, within DVUA0063 at 79.619 kb on - strand, within DVUA0063 at 79.639 kb on + strand, within DVUA0063 at 79.655 kb on + strand, within DVUA0063 at 79.661 kb on + strand, within DVUA0063 at 79.667 kb on - strand, within DVUA0063 at 79.670 kb on + strand, within DVUA0063 at 79.678 kb on - strand, within DVUA0063 at 79.772 kb on + strand, within DVUA0063 at 79.902 kb on + strand, within DVUA0063 at 79.940 kb on - strand at 79.966 kb on + strand at 79.975 kb on + strand at 80.000 kb on + strand at 80.044 kb on - strand at 80.067 kb on - strand at 80.085 kb on + strand at 80.096 kb on + strand at 80.106 kb on + strand at 80.225 kb on - strand, within DVUA0063.1 at 80.421 kb on + strand, within DVUA0063.1 at 80.468 kb on - strand, within DVUA0063.1 at 80.477 kb on - strand, within DVUA0063.1 at 80.505 kb on + strand, within DVUA0063.1 at 80.505 kb on + strand, within DVUA0063.1 at 80.513 kb on - strand, within DVUA0063.1 at 80.513 kb on - strand, within DVUA0063.1 at 80.528 kb on + strand, within DVUA0063.1 at 80.559 kb on - strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.568 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.615 kb on - strand, within DVUA0063.1 at 80.936 kb on - strand, within DVUA0063.1 at 80.951 kb on + strand, within DVUA0063.1 at 81.107 kb on + strand at 81.216 kb on + strand at 81.288 kb on - strand at 81.291 kb on + strand at 81.301 kb on + strand at 81.309 kb on - strand at 81.312 kb on + strand at 81.356 kb on + strand, within DVUA0064 at 81.359 kb on - strand, within DVUA0064 at 81.389 kb on - strand, within DVUA0064 at 81.533 kb on - strand, within DVUA0064 at 81.573 kb on - strand, within DVUA0064 at 81.625 kb on + strand, within DVUA0064 at 81.625 kb on + strand, within DVUA0064 at 81.752 kb on - strand, within DVUA0064 at 81.787 kb on - strand, within DVUA0064 at 81.853 kb on - strand, within DVUA0064 at 81.938 kb on - strand, within DVUA0064 at 81.970 kb on - strand, within DVUA0064 at 82.022 kb on + strand, within DVUA0064 at 82.045 kb on - strand, within DVUA0064 at 82.066 kb on - strand, within DVUA0064
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM) remove 79,093 - DVUA0063 0.36 -0.1 79,138 - DVUA0063 0.39 -0.4 79,160 + DVUA0063 0.40 -0.7 79,289 + DVUA0063 0.48 +0.0 79,318 - DVUA0063 0.50 +0.1 79,324 + DVUA0063 0.51 +0.0 79,449 + DVUA0063 0.59 -0.0 79,449 + DVUA0063 0.59 +0.0 79,454 + DVUA0063 0.59 -0.2 79,498 - DVUA0063 0.62 +0.0 79,535 - DVUA0063 0.64 -0.1 79,570 + DVUA0063 0.66 -2.0 79,578 - DVUA0063 0.67 +0.2 79,619 - DVUA0063 0.70 +0.4 79,639 + DVUA0063 0.71 +0.3 79,655 + DVUA0063 0.72 -0.0 79,661 + DVUA0063 0.72 -0.4 79,667 - DVUA0063 0.73 -0.3 79,670 + DVUA0063 0.73 -0.0 79,678 - DVUA0063 0.73 -0.4 79,772 + DVUA0063 0.79 +0.1 79,902 + DVUA0063 0.88 +0.6 79,940 - -0.4 79,966 + -0.3 79,975 + -0.1 80,000 + -0.1 80,044 - +0.2 80,067 - +0.0 80,085 + +0.1 80,096 + -0.5 80,106 + -0.1 80,225 - DVUA0063.1 0.13 +0.2 80,421 + DVUA0063.1 0.33 -1.1 80,468 - DVUA0063.1 0.38 +0.1 80,477 - DVUA0063.1 0.38 +0.1 80,505 + DVUA0063.1 0.41 -0.9 80,505 + DVUA0063.1 0.41 -0.1 80,513 - DVUA0063.1 0.42 -0.1 80,513 - DVUA0063.1 0.42 +0.1 80,528 + DVUA0063.1 0.44 +0.1 80,559 - DVUA0063.1 0.47 -0.2 80,561 + DVUA0063.1 0.47 +0.1 80,561 + DVUA0063.1 0.47 +1.6 80,561 + DVUA0063.1 0.47 -0.5 80,568 - DVUA0063.1 0.48 -1.9 80,569 - DVUA0063.1 0.48 -0.6 80,569 - DVUA0063.1 0.48 -1.2 80,569 - DVUA0063.1 0.48 -0.5 80,615 - DVUA0063.1 0.52 +0.6 80,936 - DVUA0063.1 0.84 -1.1 80,951 + DVUA0063.1 0.86 +0.2 81,107 + -1.0 81,216 + +0.5 81,288 - +0.4 81,291 + +0.9 81,301 + -0.2 81,309 - -0.2 81,312 + -0.1 81,356 + DVUA0064 0.11 +0.7 81,359 - DVUA0064 0.11 +0.1 81,389 - DVUA0064 0.13 +0.0 81,533 - DVUA0064 0.21 +0.2 81,573 - DVUA0064 0.24 +0.5 81,625 + DVUA0064 0.27 -0.1 81,625 + DVUA0064 0.27 -0.1 81,752 - DVUA0064 0.34 +0.1 81,787 - DVUA0064 0.36 +0.1 81,853 - DVUA0064 0.40 -1.3 81,938 - DVUA0064 0.45 -0.0 81,970 - DVUA0064 0.47 +1.2 82,022 + DVUA0064 0.50 -0.0 82,045 - DVUA0064 0.51 +2.0 82,066 - DVUA0064 0.52 +0.2
Or see this region's nucleotide sequence