Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0052 and DVUA0053 are separated by 250 nucleotides DVUA0053 and DVUA0054 overlap by 4 nucleotides DVUA0054 and DVUA0055 overlap by 4 nucleotides DVUA0055 and DVUA0056 overlap by 11 nucleotides
DVUA0052: DVUA0052 - conserved hypothetical protein (TIGR), at 64,069 to 64,737
DVUA0052
DVUA0053: DVUA0053 - conserved hypothetical protein (TIGR), at 64,988 to 65,575
DVUA0053
DVUA0054: DVUA0054 - glycosyl transferase, group 1 family protein (TIGR), at 65,572 to 66,972
DVUA0054
DVUA0055: DVUA0055 - membrane protein, putative (TIGR), at 66,969 to 67,922
DVUA0055
DVUA0056: DVUA0056 - hypothetical protein (TIGR), at 67,912 to 68,532
DVUA0056
Position (kb) 65
66
67 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 64.650 kb on + strand, within DVUA0052 at 64.701 kb on + strand at 64.701 kb on + strand at 64.709 kb on - strand at 64.714 kb on + strand at 64.717 kb on - strand at 64.724 kb on + strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.740 kb on - strand at 64.768 kb on - strand at 64.779 kb on - strand at 64.779 kb on - strand at 64.781 kb on + strand at 64.835 kb on + strand at 65.030 kb on + strand at 65.035 kb on + strand at 65.038 kb on - strand at 65.043 kb on - strand at 65.121 kb on + strand, within DVUA0053 at 65.138 kb on + strand, within DVUA0053 at 65.153 kb on + strand, within DVUA0053 at 65.161 kb on - strand, within DVUA0053 at 65.259 kb on - strand, within DVUA0053 at 65.264 kb on - strand, within DVUA0053 at 65.327 kb on + strand, within DVUA0053 at 65.444 kb on + strand, within DVUA0053 at 65.452 kb on - strand, within DVUA0053 at 65.516 kb on + strand, within DVUA0053 at 65.597 kb on + strand at 65.605 kb on - strand at 65.611 kb on - strand at 65.637 kb on + strand at 65.649 kb on - strand at 65.895 kb on + strand, within DVUA0054 at 65.903 kb on - strand, within DVUA0054 at 65.903 kb on - strand, within DVUA0054 at 65.903 kb on - strand, within DVUA0054 at 65.921 kb on + strand, within DVUA0054 at 65.929 kb on - strand, within DVUA0054 at 65.980 kb on + strand, within DVUA0054 at 66.012 kb on + strand, within DVUA0054 at 66.045 kb on - strand, within DVUA0054 at 66.055 kb on - strand, within DVUA0054 at 66.147 kb on - strand, within DVUA0054 at 66.149 kb on + strand, within DVUA0054 at 66.221 kb on + strand, within DVUA0054 at 66.292 kb on + strand, within DVUA0054 at 66.344 kb on - strand, within DVUA0054 at 66.401 kb on - strand, within DVUA0054 at 66.413 kb on + strand, within DVUA0054 at 66.464 kb on - strand, within DVUA0054 at 66.479 kb on - strand, within DVUA0054 at 66.487 kb on - strand, within DVUA0054 at 66.507 kb on + strand, within DVUA0054 at 66.521 kb on + strand, within DVUA0054 at 66.543 kb on + strand, within DVUA0054 at 66.574 kb on - strand, within DVUA0054 at 66.651 kb on - strand, within DVUA0054 at 66.743 kb on + strand, within DVUA0054 at 66.743 kb on + strand, within DVUA0054 at 66.751 kb on - strand, within DVUA0054 at 66.769 kb on - strand, within DVUA0054 at 66.907 kb on + strand at 66.921 kb on + strand at 67.007 kb on - strand at 67.061 kb on + strand at 67.102 kb on + strand, within DVUA0055 at 67.102 kb on + strand, within DVUA0055 at 67.105 kb on + strand, within DVUA0055 at 67.108 kb on - strand, within DVUA0055 at 67.117 kb on + strand, within DVUA0055 at 67.125 kb on - strand, within DVUA0055 at 67.137 kb on + strand, within DVUA0055 at 67.172 kb on - strand, within DVUA0055 at 67.231 kb on + strand, within DVUA0055 at 67.231 kb on + strand, within DVUA0055 at 67.239 kb on - strand, within DVUA0055 at 67.239 kb on - strand, within DVUA0055 at 67.275 kb on + strand, within DVUA0055 at 67.370 kb on + strand, within DVUA0055 at 67.370 kb on + strand, within DVUA0055 at 67.370 kb on + strand, within DVUA0055 at 67.370 kb on + strand, within DVUA0055 at 67.378 kb on - strand, within DVUA0055 at 67.378 kb on - strand, within DVUA0055 at 67.446 kb on + strand, within DVUA0055 at 67.651 kb on + strand, within DVUA0055 at 67.803 kb on + strand, within DVUA0055 at 67.803 kb on + strand, within DVUA0055 at 67.874 kb on + strand at 67.892 kb on - strand at 67.911 kb on + strand at 67.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 64,650 + DVUA0052 0.87 -1.1 64,701 + -0.8 64,701 + +1.0 64,709 - +0.7 64,714 + +0.7 64,717 - +1.7 64,724 + -1.6 64,732 + +0.4 64,732 + -0.4 64,740 - +0.3 64,768 - -2.3 64,779 - +1.9 64,779 - +1.3 64,781 + -1.3 64,835 + +4.8 65,030 + +0.3 65,035 + -0.3 65,038 - -0.6 65,043 - -2.9 65,121 + DVUA0053 0.23 -0.1 65,138 + DVUA0053 0.26 +0.0 65,153 + DVUA0053 0.28 -2.3 65,161 - DVUA0053 0.29 +0.2 65,259 - DVUA0053 0.46 -1.3 65,264 - DVUA0053 0.47 -1.0 65,327 + DVUA0053 0.58 +1.2 65,444 + DVUA0053 0.78 -0.3 65,452 - DVUA0053 0.79 -2.1 65,516 + DVUA0053 0.90 +0.7 65,597 + -1.7 65,605 - +0.6 65,611 - +0.9 65,637 + +0.5 65,649 - -2.0 65,895 + DVUA0054 0.23 -0.2 65,903 - DVUA0054 0.24 -2.8 65,903 - DVUA0054 0.24 -0.1 65,903 - DVUA0054 0.24 -1.9 65,921 + DVUA0054 0.25 -0.6 65,929 - DVUA0054 0.25 -2.6 65,980 + DVUA0054 0.29 -1.5 66,012 + DVUA0054 0.31 +0.6 66,045 - DVUA0054 0.34 -2.1 66,055 - DVUA0054 0.34 +1.0 66,147 - DVUA0054 0.41 +0.6 66,149 + DVUA0054 0.41 -2.6 66,221 + DVUA0054 0.46 -3.6 66,292 + DVUA0054 0.51 -0.2 66,344 - DVUA0054 0.55 -0.2 66,401 - DVUA0054 0.59 -2.7 66,413 + DVUA0054 0.60 -3.9 66,464 - DVUA0054 0.64 +0.2 66,479 - DVUA0054 0.65 -0.9 66,487 - DVUA0054 0.65 -2.1 66,507 + DVUA0054 0.67 +0.0 66,521 + DVUA0054 0.68 -0.8 66,543 + DVUA0054 0.69 -3.4 66,574 - DVUA0054 0.72 -2.3 66,651 - DVUA0054 0.77 -1.2 66,743 + DVUA0054 0.84 +0.6 66,743 + DVUA0054 0.84 +0.5 66,751 - DVUA0054 0.84 +0.3 66,769 - DVUA0054 0.85 +0.8 66,907 + -2.8 66,921 + -1.7 67,007 - -2.1 67,061 + +0.3 67,102 + DVUA0055 0.14 +3.0 67,102 + DVUA0055 0.14 -0.9 67,105 + DVUA0055 0.14 -3.0 67,108 - DVUA0055 0.15 -2.2 67,117 + DVUA0055 0.16 +1.6 67,125 - DVUA0055 0.16 +0.2 67,137 + DVUA0055 0.18 +0.6 67,172 - DVUA0055 0.21 -0.5 67,231 + DVUA0055 0.27 +0.7 67,231 + DVUA0055 0.27 -0.0 67,239 - DVUA0055 0.28 -0.2 67,239 - DVUA0055 0.28 +0.1 67,275 + DVUA0055 0.32 +0.1 67,370 + DVUA0055 0.42 -1.0 67,370 + DVUA0055 0.42 -0.3 67,370 + DVUA0055 0.42 -1.9 67,370 + DVUA0055 0.42 +1.1 67,378 - DVUA0055 0.43 -1.6 67,378 - DVUA0055 0.43 -0.6 67,446 + DVUA0055 0.50 +1.9 67,651 + DVUA0055 0.71 -1.9 67,803 + DVUA0055 0.87 +1.6 67,803 + DVUA0055 0.87 -0.4 67,874 + -2.6 67,892 - -0.4 67,911 + -0.3 67,966 + -1.5
Or see this region's nucleotide sequence