Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0073

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0072 and DVUA0073 are separated by 108 nucleotidesDVUA0073 and DVUA0074 are separated by 90 nucleotidesDVUA0074 and DVUA0075 are separated by 87 nucleotides DVUA0072: DVUA0072 - glycosyl transferase, group 1 family protein (TIGR), at 96,400 to 97,737 DVUA0072 DVUA0073: DVUA0073 - asparagine synthase (glutamine-hydrolyzing), putative (TIGR), at 97,846 to 100,515 DVUA0073 DVUA0074: DVUA0074 - sulfotransferase family protein (TIGR), at 100,606 to 101,295 DVUA0074 DVUA0075: DVUA0075 - radical SAM domain protein (TIGR), at 101,383 to 102,789 DVUA0075 Position (kb) 97 98 99 100 101Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 97.825 kb on + strandat 97.833 kb on - strandat 97.894 kb on - strandat 99.081 kb on + strand, within DVUA0073at 99.092 kb on + strand, within DVUA0073at 100.716 kb on + strand, within DVUA0074at 100.764 kb on - strand, within DVUA0074at 100.813 kb on - strand, within DVUA0074at 100.852 kb on + strand, within DVUA0074at 100.888 kb on - strand, within DVUA0074at 100.891 kb on + strand, within DVUA0074at 100.899 kb on - strand, within DVUA0074at 101.037 kb on - strand, within DVUA0074at 101.043 kb on - strand, within DVUA0074at 101.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
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97,825 + -0.4
97,833 - -0.4
97,894 - -3.5
99,081 + DVUA0073 0.46 +2.9
99,092 + DVUA0073 0.47 +0.9
100,716 + DVUA0074 0.16 -1.6
100,764 - DVUA0074 0.23 -3.1
100,813 - DVUA0074 0.30 +0.3
100,852 + DVUA0074 0.36 -0.8
100,888 - DVUA0074 0.41 -0.4
100,891 + DVUA0074 0.41 -2.8
100,899 - DVUA0074 0.42 +0.2
101,037 - DVUA0074 0.62 -2.3
101,043 - DVUA0074 0.63 +2.9
101,269 + -0.4

Or see this region's nucleotide sequence