Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt csrA and yviF overlap by 22 nucleotides yviF and flgM are separated by 350 nucleotides flgM and DVU0524 are separated by 25 nucleotides DVU0524 and DVU0525 are separated by 217 nucleotides
DVU0521: csrA - carbon storage regulator (TIGR), at 596,207 to 596,443
csrA
DVU0522: yviF - conserved hypothetical protein (TIGR), at 596,422 to 596,943
yviF
DVU0523: flgM - negative regulator of flagellin synthesis FlgM (TIGR), at 597,294 to 597,608
flgM
DVU0524: DVU0524 - hypothetical protein (TIGR), at 597,634 to 598,050
DVU0524
DVU0525: DVU0525 - transcriptional regulator, MarR family (TIGR), at 598,268 to 598,936
DVU0525
Position (kb) 597
598 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 596.353 kb on - strand, within csrA at 596.394 kb on + strand, within csrA at 596.397 kb on - strand, within csrA at 596.469 kb on + strand at 596.486 kb on + strand, within yviF at 596.507 kb on + strand, within yviF at 596.610 kb on + strand, within yviF at 596.686 kb on + strand, within yviF at 596.694 kb on + strand, within yviF at 596.756 kb on + strand, within yviF at 596.771 kb on + strand, within yviF at 596.938 kb on + strand at 596.938 kb on + strand at 597.143 kb on - strand at 597.164 kb on - strand at 597.259 kb on + strand at 597.267 kb on - strand at 597.327 kb on - strand, within flgM at 597.436 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.560 kb on + strand, within flgM at 597.573 kb on - strand, within flgM at 597.582 kb on - strand at 597.677 kb on + strand, within DVU0524 at 597.690 kb on - strand, within DVU0524 at 597.774 kb on + strand, within DVU0524 at 597.776 kb on + strand, within DVU0524 at 597.813 kb on - strand, within DVU0524 at 597.830 kb on + strand, within DVU0524 at 598.012 kb on - strand at 598.090 kb on - strand at 598.278 kb on - strand at 598.318 kb on + strand at 598.345 kb on - strand, within DVU0525 at 598.367 kb on - strand, within DVU0525 at 598.426 kb on - strand, within DVU0525 at 598.432 kb on + strand, within DVU0525 at 598.483 kb on + strand, within DVU0525 at 598.499 kb on + strand, within DVU0525 at 598.552 kb on - strand, within DVU0525
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 596,353 - csrA DVU0521 0.62 -2.4 596,394 + csrA DVU0521 0.79 -0.0 596,397 - csrA DVU0521 0.80 -2.1 596,469 + -1.6 596,486 + yviF DVU0522 0.12 +0.5 596,507 + yviF DVU0522 0.16 -1.7 596,610 + yviF DVU0522 0.36 -0.7 596,686 + yviF DVU0522 0.51 +0.2 596,694 + yviF DVU0522 0.52 -1.4 596,756 + yviF DVU0522 0.64 -1.3 596,771 + yviF DVU0522 0.67 -1.5 596,938 + +1.5 596,938 + +0.7 597,143 - -0.2 597,164 - +0.5 597,259 + +0.9 597,267 - +1.3 597,327 - flgM DVU0523 0.10 +1.3 597,436 + flgM DVU0523 0.45 -0.7 597,473 + flgM DVU0523 0.57 +1.1 597,473 + flgM DVU0523 0.57 -0.6 597,473 + flgM DVU0523 0.57 +0.4 597,473 + flgM DVU0523 0.57 -1.0 597,473 + flgM DVU0523 0.57 +0.1 597,473 + flgM DVU0523 0.57 -2.2 597,473 + flgM DVU0523 0.57 +0.0 597,473 + flgM DVU0523 0.57 +0.7 597,473 + flgM DVU0523 0.57 -1.0 597,481 - flgM DVU0523 0.59 +1.8 597,481 - flgM DVU0523 0.59 -0.3 597,481 - flgM DVU0523 0.59 -0.0 597,481 - flgM DVU0523 0.59 +0.1 597,560 + flgM DVU0523 0.84 -0.5 597,573 - flgM DVU0523 0.89 -2.0 597,582 - -1.9 597,677 + DVU0524 0.10 -0.5 597,690 - DVU0524 0.13 -2.2 597,774 + DVU0524 0.34 +0.6 597,776 + DVU0524 0.34 +0.8 597,813 - DVU0524 0.43 -1.6 597,830 + DVU0524 0.47 +1.3 598,012 - -0.1 598,090 - -0.1 598,278 - +1.0 598,318 + -0.7 598,345 - DVU0525 0.12 +0.6 598,367 - DVU0525 0.15 -1.2 598,426 - DVU0525 0.24 -3.8 598,432 + DVU0525 0.25 +1.3 598,483 + DVU0525 0.32 +0.2 598,499 + DVU0525 0.35 -0.6 598,552 - DVU0525 0.42 -1.9
Or see this region's nucleotide sequence