Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argC and DVU0493 are separated by 9 nucleotides DVU0493 and DVU0494 are separated by 65 nucleotides DVU0494 and DVU0495 are separated by 10 nucleotides
DVU0492: argC - N-acetyl-gamma-glutamyl-phosphate reductase (TIGR), at 561,263 to 562,327
argC
DVU0493: DVU0493 - hypothetical protein (TIGR), at 562,337 to 562,645
DVU0493
DVU0494: DVU0494 - aminotransferase, class V (TIGR), at 562,711 to 563,880
DVU0494
DVU0495: DVU0495 - conserved hypothetical protein (TIGR), at 563,891 to 565,087
DVU0495
Position (kb) 562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 561.719 kb on + strand, within argC at 561.727 kb on - strand, within argC at 561.737 kb on - strand, within argC at 561.830 kb on - strand, within argC at 561.832 kb on - strand, within argC at 561.841 kb on + strand, within argC at 561.858 kb on - strand, within argC at 561.885 kb on + strand, within argC at 561.944 kb on - strand, within argC at 561.959 kb on + strand, within argC at 562.163 kb on + strand, within argC at 562.182 kb on + strand, within argC at 562.190 kb on - strand, within argC at 562.324 kb on + strand at 562.379 kb on - strand, within DVU0493 at 562.425 kb on + strand, within DVU0493 at 562.475 kb on - strand, within DVU0493 at 562.625 kb on + strand at 562.641 kb on + strand at 562.655 kb on + strand at 562.700 kb on + strand at 562.708 kb on - strand at 563.897 kb on - strand at 563.921 kb on - strand at 563.969 kb on + strand at 564.038 kb on + strand, within DVU0495 at 564.147 kb on - strand, within DVU0495 at 564.192 kb on + strand, within DVU0495 at 564.200 kb on - strand, within DVU0495 at 564.254 kb on + strand, within DVU0495 at 564.254 kb on + strand, within DVU0495 at 564.257 kb on - strand, within DVU0495 at 564.262 kb on - strand, within DVU0495 at 564.262 kb on - strand, within DVU0495 at 564.307 kb on - strand, within DVU0495 at 564.307 kb on - strand, within DVU0495 at 564.414 kb on + strand, within DVU0495 at 564.414 kb on + strand, within DVU0495 at 564.491 kb on + strand, within DVU0495 at 564.539 kb on + strand, within DVU0495 at 564.649 kb on + strand, within DVU0495 at 564.796 kb on - strand, within DVU0495 at 564.796 kb on - strand, within DVU0495 at 564.805 kb on + strand, within DVU0495 at 564.809 kb on + strand, within DVU0495
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 561,719 + argC DVU0492 0.43 -2.6 561,727 - argC DVU0492 0.44 +3.3 561,737 - argC DVU0492 0.45 -2.1 561,830 - argC DVU0492 0.53 +1.0 561,832 - argC DVU0492 0.53 -0.5 561,841 + argC DVU0492 0.54 -3.3 561,858 - argC DVU0492 0.56 +1.4 561,885 + argC DVU0492 0.58 +0.8 561,944 - argC DVU0492 0.64 -0.6 561,959 + argC DVU0492 0.65 -1.6 562,163 + argC DVU0492 0.85 -0.5 562,182 + argC DVU0492 0.86 -1.4 562,190 - argC DVU0492 0.87 +1.6 562,324 + -2.3 562,379 - DVU0493 0.14 -2.6 562,425 + DVU0493 0.28 -1.0 562,475 - DVU0493 0.45 +1.6 562,625 + -1.0 562,641 + +1.6 562,655 + +1.0 562,700 + -1.4 562,708 - -0.9 563,897 - +2.7 563,921 - -3.2 563,969 + -1.9 564,038 + DVU0495 0.12 +0.5 564,147 - DVU0495 0.21 -1.0 564,192 + DVU0495 0.25 -0.1 564,200 - DVU0495 0.26 -3.6 564,254 + DVU0495 0.30 -1.7 564,254 + DVU0495 0.30 -0.6 564,257 - DVU0495 0.31 +1.0 564,262 - DVU0495 0.31 +0.8 564,262 - DVU0495 0.31 +1.0 564,307 - DVU0495 0.35 -0.5 564,307 - DVU0495 0.35 -0.2 564,414 + DVU0495 0.44 +0.2 564,414 + DVU0495 0.44 -2.0 564,491 + DVU0495 0.50 +3.1 564,539 + DVU0495 0.54 -0.9 564,649 + DVU0495 0.63 -2.2 564,796 - DVU0495 0.76 +0.3 564,796 - DVU0495 0.76 -1.8 564,805 + DVU0495 0.76 -0.7 564,809 + DVU0495 0.77 +1.0
Or see this region's nucleotide sequence