Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0432 and DVU0433 are separated by 12 nucleotides DVU0433 and mnhA overlap by 1 nucleotides mnhA and DVU0436 are separated by 310 nucleotides
DVU0432: DVU0432 - Ech hydrogenase, subunit EchC, putative (TIGR), at 486,305 to 486,778
DVU0432
DVU0433: DVU0433 - Ech hydrogenase, subunit EchB, putative (TIGR), at 486,791 to 487,639
DVU0433
DVU0434: mnhA - Ech hydrogenase, subunit EchA, putative (TIGR), at 487,639 to 489,585
mnhA
DVU0436: DVU0436 - transcriptional regulator, TetR family (TIGR), at 489,896 to 490,600
DVU0436
Position (kb) 487
488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 486.805 kb on + strand at 486.813 kb on - strand at 486.860 kb on - strand at 486.976 kb on + strand, within DVU0433 at 486.976 kb on + strand, within DVU0433 at 486.994 kb on + strand, within DVU0433 at 487.011 kb on + strand, within DVU0433 at 487.019 kb on - strand, within DVU0433 at 487.019 kb on - strand, within DVU0433 at 487.029 kb on - strand, within DVU0433 at 487.036 kb on - strand, within DVU0433 at 487.067 kb on + strand, within DVU0433 at 487.097 kb on + strand, within DVU0433 at 487.117 kb on + strand, within DVU0433 at 487.125 kb on - strand, within DVU0433 at 487.125 kb on - strand, within DVU0433 at 487.129 kb on + strand, within DVU0433 at 487.131 kb on + strand, within DVU0433 at 487.222 kb on - strand, within DVU0433 at 487.230 kb on - strand, within DVU0433 at 487.280 kb on - strand, within DVU0433 at 487.411 kb on - strand, within DVU0433 at 487.417 kb on + strand, within DVU0433 at 487.446 kb on + strand, within DVU0433 at 487.461 kb on + strand, within DVU0433 at 487.482 kb on + strand, within DVU0433 at 487.500 kb on - strand, within DVU0433 at 487.513 kb on + strand, within DVU0433 at 487.525 kb on - strand, within DVU0433 at 487.611 kb on - strand at 487.637 kb on + strand at 487.671 kb on - strand at 487.728 kb on - strand at 487.764 kb on + strand at 487.820 kb on + strand at 487.925 kb on + strand, within mnhA at 487.925 kb on + strand, within mnhA at 487.950 kb on + strand, within mnhA at 487.964 kb on + strand, within mnhA at 487.977 kb on - strand, within mnhA at 488.014 kb on + strand, within mnhA at 488.017 kb on - strand, within mnhA at 488.118 kb on + strand, within mnhA at 488.128 kb on + strand, within mnhA at 488.141 kb on - strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.161 kb on - strand, within mnhA at 488.161 kb on - strand, within mnhA at 488.168 kb on - strand, within mnhA at 488.172 kb on + strand, within mnhA at 488.237 kb on - strand, within mnhA at 488.352 kb on + strand, within mnhA at 488.398 kb on - strand, within mnhA at 488.550 kb on - strand, within mnhA at 488.552 kb on + strand, within mnhA at 488.559 kb on + strand, within mnhA at 488.585 kb on + strand, within mnhA at 488.611 kb on - strand, within mnhA at 488.611 kb on - strand, within mnhA at 488.621 kb on - strand, within mnhA at 488.629 kb on + strand, within mnhA at 488.663 kb on + strand, within mnhA at 488.663 kb on + strand, within mnhA at 488.671 kb on - strand, within mnhA at 488.671 kb on - strand, within mnhA at 488.671 kb on - strand, within mnhA at 488.673 kb on + strand, within mnhA at 488.673 kb on + strand, within mnhA at 488.675 kb on + strand, within mnhA at 488.683 kb on + strand, within mnhA at 488.683 kb on - strand, within mnhA at 488.691 kb on - strand, within mnhA at 488.701 kb on - strand, within mnhA at 488.713 kb on + strand, within mnhA at 488.720 kb on + strand, within mnhA at 488.789 kb on - strand, within mnhA at 488.799 kb on - strand, within mnhA at 488.848 kb on - strand, within mnhA at 488.853 kb on - strand, within mnhA at 488.929 kb on - strand, within mnhA at 488.955 kb on - strand, within mnhA at 488.980 kb on + strand, within mnhA at 489.081 kb on - strand, within mnhA at 489.105 kb on - strand, within mnhA at 489.207 kb on + strand, within mnhA at 489.299 kb on + strand, within mnhA at 489.307 kb on - strand, within mnhA at 489.376 kb on + strand, within mnhA at 489.385 kb on - strand, within mnhA at 489.431 kb on - strand at 489.437 kb on + strand at 489.455 kb on + strand at 489.455 kb on + strand at 489.657 kb on + strand at 489.669 kb on + strand at 489.884 kb on + strand at 489.891 kb on + strand at 489.930 kb on + strand at 489.935 kb on + strand at 489.943 kb on - strand at 489.943 kb on - strand at 490.119 kb on + strand, within DVU0436 at 490.418 kb on - strand, within DVU0436 at 490.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 486,805 + -2.0 486,813 - -2.5 486,860 - -1.6 486,976 + DVU0433 0.22 -2.4 486,976 + DVU0433 0.22 -1.3 486,994 + DVU0433 0.24 -1.1 487,011 + DVU0433 0.26 -1.3 487,019 - DVU0433 0.27 -2.1 487,019 - DVU0433 0.27 -1.6 487,029 - DVU0433 0.28 -2.1 487,036 - DVU0433 0.29 -1.9 487,067 + DVU0433 0.33 -1.8 487,097 + DVU0433 0.36 -1.6 487,117 + DVU0433 0.38 -2.0 487,125 - DVU0433 0.39 -2.4 487,125 - DVU0433 0.39 -1.7 487,129 + DVU0433 0.40 -1.5 487,131 + DVU0433 0.40 -1.9 487,222 - DVU0433 0.51 -1.4 487,230 - DVU0433 0.52 -1.9 487,280 - DVU0433 0.58 -1.4 487,411 - DVU0433 0.73 -1.8 487,417 + DVU0433 0.74 -1.3 487,446 + DVU0433 0.77 -0.4 487,461 + DVU0433 0.79 +0.9 487,482 + DVU0433 0.81 -2.2 487,500 - DVU0433 0.84 -3.1 487,513 + DVU0433 0.85 -1.3 487,525 - DVU0433 0.86 -1.8 487,611 - -2.1 487,637 + -1.3 487,671 - -1.5 487,728 - -0.8 487,764 + -1.8 487,820 + +1.0 487,925 + mnhA DVU0434 0.15 -1.6 487,925 + mnhA DVU0434 0.15 -1.6 487,950 + mnhA DVU0434 0.16 -2.7 487,964 + mnhA DVU0434 0.17 -1.8 487,977 - mnhA DVU0434 0.17 -1.4 488,014 + mnhA DVU0434 0.19 -2.4 488,017 - mnhA DVU0434 0.19 -1.8 488,118 + mnhA DVU0434 0.25 -1.6 488,128 + mnhA DVU0434 0.25 -1.9 488,141 - mnhA DVU0434 0.26 -0.9 488,153 + mnhA DVU0434 0.26 -2.8 488,153 + mnhA DVU0434 0.26 -1.3 488,153 + mnhA DVU0434 0.26 -1.0 488,153 + mnhA DVU0434 0.26 -1.6 488,161 - mnhA DVU0434 0.27 +2.4 488,161 - mnhA DVU0434 0.27 -3.7 488,168 - mnhA DVU0434 0.27 -2.5 488,172 + mnhA DVU0434 0.27 -2.2 488,237 - mnhA DVU0434 0.31 -1.5 488,352 + mnhA DVU0434 0.37 -2.5 488,398 - mnhA DVU0434 0.39 -1.9 488,550 - mnhA DVU0434 0.47 -1.9 488,552 + mnhA DVU0434 0.47 -1.7 488,559 + mnhA DVU0434 0.47 -1.5 488,585 + mnhA DVU0434 0.49 -1.7 488,611 - mnhA DVU0434 0.50 -0.5 488,611 - mnhA DVU0434 0.50 -2.6 488,621 - mnhA DVU0434 0.50 -1.1 488,629 + mnhA DVU0434 0.51 -1.5 488,663 + mnhA DVU0434 0.53 -1.8 488,663 + mnhA DVU0434 0.53 -0.5 488,671 - mnhA DVU0434 0.53 -1.2 488,671 - mnhA DVU0434 0.53 -2.7 488,671 - mnhA DVU0434 0.53 -1.7 488,673 + mnhA DVU0434 0.53 -1.4 488,673 + mnhA DVU0434 0.53 -1.5 488,675 + mnhA DVU0434 0.53 -1.3 488,683 + mnhA DVU0434 0.54 -2.3 488,683 - mnhA DVU0434 0.54 -1.8 488,691 - mnhA DVU0434 0.54 -3.0 488,701 - mnhA DVU0434 0.55 +1.2 488,713 + mnhA DVU0434 0.55 -1.5 488,720 + mnhA DVU0434 0.56 -0.8 488,789 - mnhA DVU0434 0.59 -0.6 488,799 - mnhA DVU0434 0.60 -0.4 488,848 - mnhA DVU0434 0.62 +3.7 488,853 - mnhA DVU0434 0.62 -1.0 488,929 - mnhA DVU0434 0.66 -1.9 488,955 - mnhA DVU0434 0.68 -0.2 488,980 + mnhA DVU0434 0.69 -1.3 489,081 - mnhA DVU0434 0.74 -1.7 489,105 - mnhA DVU0434 0.75 -2.1 489,207 + mnhA DVU0434 0.81 -1.7 489,299 + mnhA DVU0434 0.85 -2.4 489,307 - mnhA DVU0434 0.86 -1.6 489,376 + mnhA DVU0434 0.89 -0.6 489,385 - mnhA DVU0434 0.90 -1.8 489,431 - -1.6 489,437 + -0.4 489,455 + -2.5 489,455 + -2.4 489,657 + -1.7 489,669 + -1.7 489,884 + -0.4 489,891 + -0.2 489,930 + +1.9 489,935 + +1.1 489,943 - +0.7 489,943 - -3.4 490,119 + DVU0436 0.32 +0.9 490,418 - DVU0436 0.74 -1.5 490,550 + -1.0
Or see this region's nucleotide sequence