Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0430 and DVU0431 are separated by 12 nucleotides DVU0431 and DVU0432 are separated by 35 nucleotides DVU0432 and DVU0433 are separated by 12 nucleotides DVU0433 and mnhA overlap by 1 nucleotides
DVU0430: DVU0430 - Ech hydrogenase, subunit EchE, putative (TIGR), at 484,788 to 485,864
DVU0430
DVU0431: DVU0431 - Ech hydrogenase, subunit EchD, putative (TIGR), at 485,877 to 486,269
DVU0431
DVU0432: DVU0432 - Ech hydrogenase, subunit EchC, putative (TIGR), at 486,305 to 486,778
DVU0432
DVU0433: DVU0433 - Ech hydrogenase, subunit EchB, putative (TIGR), at 486,791 to 487,639
DVU0433
DVU0434: mnhA - Ech hydrogenase, subunit EchA, putative (TIGR), at 487,639 to 489,585
mnhA
Position (kb) 486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 485.824 kb on + strand at 485.866 kb on + strand at 485.870 kb on - strand at 486.042 kb on - strand, within DVU0431 at 486.072 kb on - strand, within DVU0431 at 486.102 kb on + strand, within DVU0431 at 486.102 kb on + strand, within DVU0431 at 486.102 kb on + strand, within DVU0431 at 486.178 kb on + strand, within DVU0431 at 486.178 kb on + strand, within DVU0431 at 486.195 kb on - strand, within DVU0431 at 486.248 kb on + strand at 486.279 kb on - strand at 486.445 kb on + strand, within DVU0432 at 486.522 kb on + strand, within DVU0432 at 486.612 kb on + strand, within DVU0432 at 486.613 kb on + strand, within DVU0432 at 486.621 kb on - strand, within DVU0432 at 486.805 kb on + strand at 486.813 kb on - strand at 486.860 kb on - strand at 486.976 kb on + strand, within DVU0433 at 486.976 kb on + strand, within DVU0433 at 486.994 kb on + strand, within DVU0433 at 487.011 kb on + strand, within DVU0433 at 487.019 kb on - strand, within DVU0433 at 487.019 kb on - strand, within DVU0433 at 487.029 kb on - strand, within DVU0433 at 487.036 kb on - strand, within DVU0433 at 487.067 kb on + strand, within DVU0433 at 487.097 kb on + strand, within DVU0433 at 487.117 kb on + strand, within DVU0433 at 487.125 kb on - strand, within DVU0433 at 487.125 kb on - strand, within DVU0433 at 487.129 kb on + strand, within DVU0433 at 487.131 kb on + strand, within DVU0433 at 487.222 kb on - strand, within DVU0433 at 487.230 kb on - strand, within DVU0433 at 487.280 kb on - strand, within DVU0433 at 487.411 kb on - strand, within DVU0433 at 487.417 kb on + strand, within DVU0433 at 487.446 kb on + strand, within DVU0433 at 487.461 kb on + strand, within DVU0433 at 487.482 kb on + strand, within DVU0433 at 487.500 kb on - strand, within DVU0433 at 487.513 kb on + strand, within DVU0433 at 487.525 kb on - strand, within DVU0433 at 487.611 kb on - strand at 487.637 kb on + strand at 487.671 kb on - strand at 487.728 kb on - strand at 487.764 kb on + strand at 487.820 kb on + strand at 487.925 kb on + strand, within mnhA at 487.925 kb on + strand, within mnhA at 487.950 kb on + strand, within mnhA at 487.964 kb on + strand, within mnhA at 487.977 kb on - strand, within mnhA at 488.014 kb on + strand, within mnhA at 488.017 kb on - strand, within mnhA at 488.118 kb on + strand, within mnhA at 488.128 kb on + strand, within mnhA at 488.141 kb on - strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.161 kb on - strand, within mnhA at 488.161 kb on - strand, within mnhA at 488.168 kb on - strand, within mnhA at 488.172 kb on + strand, within mnhA at 488.237 kb on - strand, within mnhA at 488.352 kb on + strand, within mnhA at 488.398 kb on - strand, within mnhA at 488.550 kb on - strand, within mnhA at 488.552 kb on + strand, within mnhA at 488.559 kb on + strand, within mnhA at 488.585 kb on + strand, within mnhA at 488.611 kb on - strand, within mnhA at 488.611 kb on - strand, within mnhA at 488.621 kb on - strand, within mnhA at 488.629 kb on + strand, within mnhA
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 485,824 + -1.0 485,866 + -1.5 485,870 - -1.7 486,042 - DVU0431 0.42 -1.4 486,072 - DVU0431 0.50 -0.3 486,102 + DVU0431 0.57 -1.5 486,102 + DVU0431 0.57 -0.1 486,102 + DVU0431 0.57 -1.3 486,178 + DVU0431 0.77 -1.6 486,178 + DVU0431 0.77 -1.0 486,195 - DVU0431 0.81 -1.5 486,248 + -2.2 486,279 - -2.4 486,445 + DVU0432 0.30 -2.3 486,522 + DVU0432 0.46 -2.1 486,612 + DVU0432 0.65 +2.2 486,613 + DVU0432 0.65 -2.2 486,621 - DVU0432 0.67 -3.5 486,805 + -2.0 486,813 - -2.5 486,860 - -1.6 486,976 + DVU0433 0.22 -2.4 486,976 + DVU0433 0.22 -1.3 486,994 + DVU0433 0.24 -1.1 487,011 + DVU0433 0.26 -1.3 487,019 - DVU0433 0.27 -2.1 487,019 - DVU0433 0.27 -1.6 487,029 - DVU0433 0.28 -2.1 487,036 - DVU0433 0.29 -1.9 487,067 + DVU0433 0.33 -1.8 487,097 + DVU0433 0.36 -1.6 487,117 + DVU0433 0.38 -2.0 487,125 - DVU0433 0.39 -2.4 487,125 - DVU0433 0.39 -1.7 487,129 + DVU0433 0.40 -1.5 487,131 + DVU0433 0.40 -1.9 487,222 - DVU0433 0.51 -1.4 487,230 - DVU0433 0.52 -1.9 487,280 - DVU0433 0.58 -1.4 487,411 - DVU0433 0.73 -1.8 487,417 + DVU0433 0.74 -1.3 487,446 + DVU0433 0.77 -0.4 487,461 + DVU0433 0.79 +0.9 487,482 + DVU0433 0.81 -2.2 487,500 - DVU0433 0.84 -3.1 487,513 + DVU0433 0.85 -1.3 487,525 - DVU0433 0.86 -1.8 487,611 - -2.1 487,637 + -1.3 487,671 - -1.5 487,728 - -0.8 487,764 + -1.8 487,820 + +1.0 487,925 + mnhA DVU0434 0.15 -1.6 487,925 + mnhA DVU0434 0.15 -1.6 487,950 + mnhA DVU0434 0.16 -2.7 487,964 + mnhA DVU0434 0.17 -1.8 487,977 - mnhA DVU0434 0.17 -1.4 488,014 + mnhA DVU0434 0.19 -2.4 488,017 - mnhA DVU0434 0.19 -1.8 488,118 + mnhA DVU0434 0.25 -1.6 488,128 + mnhA DVU0434 0.25 -1.9 488,141 - mnhA DVU0434 0.26 -0.9 488,153 + mnhA DVU0434 0.26 -2.8 488,153 + mnhA DVU0434 0.26 -1.3 488,153 + mnhA DVU0434 0.26 -1.0 488,153 + mnhA DVU0434 0.26 -1.6 488,161 - mnhA DVU0434 0.27 +2.4 488,161 - mnhA DVU0434 0.27 -3.7 488,168 - mnhA DVU0434 0.27 -2.5 488,172 + mnhA DVU0434 0.27 -2.2 488,237 - mnhA DVU0434 0.31 -1.5 488,352 + mnhA DVU0434 0.37 -2.5 488,398 - mnhA DVU0434 0.39 -1.9 488,550 - mnhA DVU0434 0.47 -1.9 488,552 + mnhA DVU0434 0.47 -1.7 488,559 + mnhA DVU0434 0.47 -1.5 488,585 + mnhA DVU0434 0.49 -1.7 488,611 - mnhA DVU0434 0.50 -0.5 488,611 - mnhA DVU0434 0.50 -2.6 488,621 - mnhA DVU0434 0.50 -1.1 488,629 + mnhA DVU0434 0.51 -1.5
Or see this region's nucleotide sequence