Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0428 and DVU0429 are separated by 393 nucleotides DVU0429 and DVU0430 are separated by 18 nucleotides DVU0430 and DVU0431 are separated by 12 nucleotides DVU0431 and DVU0432 are separated by 35 nucleotides DVU0432 and DVU0433 are separated by 12 nucleotides
DVU0428: DVU0428 - conserved hypothetical protein (TIGR), at 483,654 to 483,974
DVU0428
DVU0429: DVU0429 - Ech hydrogenase, subunit EchF, putative (TIGR), at 484,368 to 484,769
DVU0429
DVU0430: DVU0430 - Ech hydrogenase, subunit EchE, putative (TIGR), at 484,788 to 485,864
DVU0430
DVU0431: DVU0431 - Ech hydrogenase, subunit EchD, putative (TIGR), at 485,877 to 486,269
DVU0431
DVU0432: DVU0432 - Ech hydrogenase, subunit EchC, putative (TIGR), at 486,305 to 486,778
DVU0432
DVU0433: DVU0433 - Ech hydrogenase, subunit EchB, putative (TIGR), at 486,791 to 487,639
DVU0433
Position (kb) 484
485
486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 483.846 kb on - strand, within DVU0428 at 483.892 kb on + strand, within DVU0428 at 483.977 kb on + strand at 483.977 kb on + strand at 483.985 kb on - strand at 484.052 kb on - strand at 484.087 kb on + strand at 484.100 kb on + strand at 484.108 kb on - strand at 484.111 kb on + strand at 484.169 kb on + strand at 484.177 kb on - strand at 484.207 kb on - strand at 484.243 kb on + strand at 484.251 kb on - strand at 484.268 kb on + strand at 484.275 kb on - strand at 484.278 kb on + strand at 484.297 kb on + strand at 484.517 kb on - strand, within DVU0429 at 484.540 kb on + strand, within DVU0429 at 484.548 kb on - strand, within DVU0429 at 484.554 kb on + strand, within DVU0429 at 484.610 kb on - strand, within DVU0429 at 484.706 kb on - strand, within DVU0429 at 484.706 kb on - strand, within DVU0429 at 484.706 kb on - strand, within DVU0429 at 484.716 kb on - strand, within DVU0429 at 484.850 kb on + strand at 484.858 kb on - strand at 484.918 kb on + strand, within DVU0430 at 484.927 kb on - strand, within DVU0430 at 484.944 kb on - strand, within DVU0430 at 484.976 kb on + strand, within DVU0430 at 485.010 kb on + strand, within DVU0430 at 485.019 kb on - strand, within DVU0430 at 485.045 kb on + strand, within DVU0430 at 485.053 kb on - strand, within DVU0430 at 485.079 kb on + strand, within DVU0430 at 485.087 kb on + strand, within DVU0430 at 485.121 kb on - strand, within DVU0430 at 485.266 kb on + strand, within DVU0430 at 485.267 kb on - strand, within DVU0430 at 485.272 kb on - strand, within DVU0430 at 485.280 kb on - strand, within DVU0430 at 485.477 kb on + strand, within DVU0430 at 485.479 kb on + strand, within DVU0430 at 485.479 kb on + strand, within DVU0430 at 485.479 kb on + strand, within DVU0430 at 485.487 kb on - strand, within DVU0430 at 485.559 kb on + strand, within DVU0430 at 485.658 kb on - strand, within DVU0430 at 485.721 kb on + strand, within DVU0430 at 485.744 kb on + strand, within DVU0430 at 485.824 kb on + strand at 485.866 kb on + strand at 485.870 kb on - strand at 486.042 kb on - strand, within DVU0431 at 486.072 kb on - strand, within DVU0431 at 486.102 kb on + strand, within DVU0431 at 486.102 kb on + strand, within DVU0431 at 486.102 kb on + strand, within DVU0431 at 486.178 kb on + strand, within DVU0431 at 486.178 kb on + strand, within DVU0431 at 486.195 kb on - strand, within DVU0431 at 486.248 kb on + strand at 486.279 kb on - strand at 486.445 kb on + strand, within DVU0432 at 486.522 kb on + strand, within DVU0432 at 486.612 kb on + strand, within DVU0432 at 486.613 kb on + strand, within DVU0432 at 486.621 kb on - strand, within DVU0432 at 486.805 kb on + strand at 486.813 kb on - strand at 486.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 483,846 - DVU0428 0.60 +0.4 483,892 + DVU0428 0.74 -1.7 483,977 + -3.4 483,977 + +0.5 483,985 - -0.8 484,052 - +0.7 484,087 + -0.1 484,100 + +1.6 484,108 - -2.8 484,111 + -2.8 484,169 + -1.7 484,177 - +1.1 484,207 - +1.1 484,243 + +0.4 484,251 - -0.4 484,268 + -1.2 484,275 - -2.0 484,278 + -2.7 484,297 + +0.7 484,517 - DVU0429 0.37 -3.2 484,540 + DVU0429 0.43 -1.3 484,548 - DVU0429 0.45 -1.6 484,554 + DVU0429 0.46 -1.6 484,610 - DVU0429 0.60 +0.3 484,706 - DVU0429 0.84 -2.1 484,706 - DVU0429 0.84 -1.2 484,706 - DVU0429 0.84 -1.3 484,716 - DVU0429 0.87 -3.9 484,850 + -0.4 484,858 - -4.3 484,918 + DVU0430 0.12 -2.2 484,927 - DVU0430 0.13 -0.8 484,944 - DVU0430 0.14 -1.0 484,976 + DVU0430 0.17 -3.9 485,010 + DVU0430 0.21 -2.8 485,019 - DVU0430 0.21 -1.9 485,045 + DVU0430 0.24 -1.9 485,053 - DVU0430 0.25 -2.1 485,079 + DVU0430 0.27 -1.4 485,087 + DVU0430 0.28 -1.7 485,121 - DVU0430 0.31 -1.3 485,266 + DVU0430 0.44 -1.7 485,267 - DVU0430 0.44 -1.2 485,272 - DVU0430 0.45 -0.9 485,280 - DVU0430 0.46 -1.7 485,477 + DVU0430 0.64 -2.3 485,479 + DVU0430 0.64 -0.4 485,479 + DVU0430 0.64 -2.7 485,479 + DVU0430 0.64 -1.9 485,487 - DVU0430 0.65 +0.0 485,559 + DVU0430 0.72 -1.4 485,658 - DVU0430 0.81 -1.9 485,721 + DVU0430 0.87 -1.8 485,744 + DVU0430 0.89 -2.0 485,824 + -1.0 485,866 + -1.5 485,870 - -1.7 486,042 - DVU0431 0.42 -1.4 486,072 - DVU0431 0.50 -0.3 486,102 + DVU0431 0.57 -1.5 486,102 + DVU0431 0.57 -0.1 486,102 + DVU0431 0.57 -1.3 486,178 + DVU0431 0.77 -1.6 486,178 + DVU0431 0.77 -1.0 486,195 - DVU0431 0.81 -1.5 486,248 + -2.2 486,279 - -2.4 486,445 + DVU0432 0.30 -2.3 486,522 + DVU0432 0.46 -2.1 486,612 + DVU0432 0.65 +2.2 486,613 + DVU0432 0.65 -2.2 486,621 - DVU0432 0.67 -3.5 486,805 + -2.0 486,813 - -2.5 486,860 - -1.6
Or see this region's nucleotide sequence