Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0411 and DVU0412 are separated by 16 nucleotides DVU0412 and trk1 are separated by 57 nucleotides trk1 and tme are separated by 118 nucleotides
DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671
DVU0411
DVU0412: DVU0412 - potassium uptake protein TrkA, putative (TIGR), at 461,688 to 462,353
DVU0412
DVU0413: trk1 - potassium uptake protein, TrkH family (TIGR), at 462,411 to 463,748
trk1
DVU0414: tme - NADP-dependent malic enzyme-related protein (TIGR), at 463,867 to 465,186
tme
Position (kb) 462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 461.480 kb on - strand, within DVU0411 at 461.504 kb on + strand at 461.512 kb on - strand at 461.521 kb on + strand at 461.539 kb on - strand at 461.634 kb on + strand at 461.816 kb on + strand, within DVU0412 at 461.824 kb on - strand, within DVU0412 at 461.903 kb on + strand, within DVU0412 at 461.965 kb on - strand, within DVU0412 at 462.012 kb on - strand, within DVU0412 at 462.046 kb on + strand, within DVU0412 at 462.046 kb on + strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.181 kb on - strand, within DVU0412 at 462.239 kb on + strand, within DVU0412 at 462.239 kb on + strand, within DVU0412 at 462.274 kb on + strand, within DVU0412 at 462.329 kb on - strand at 462.360 kb on + strand at 462.368 kb on - strand at 462.591 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.609 kb on - strand, within trk1 at 462.609 kb on - strand, within trk1 at 462.653 kb on - strand, within trk1 at 462.747 kb on + strand, within trk1 at 462.755 kb on - strand, within trk1 at 462.784 kb on + strand, within trk1 at 462.784 kb on + strand, within trk1 at 462.792 kb on - strand, within trk1 at 462.792 kb on - strand, within trk1 at 462.792 kb on - strand, within trk1 at 462.818 kb on + strand, within trk1 at 462.897 kb on - strand, within trk1 at 462.961 kb on + strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.969 kb on - strand, within trk1 at 462.978 kb on - strand, within trk1 at 462.996 kb on + strand, within trk1 at 463.029 kb on + strand, within trk1 at 463.072 kb on - strand, within trk1 at 463.087 kb on - strand, within trk1 at 463.145 kb on + strand, within trk1 at 463.189 kb on - strand, within trk1 at 463.302 kb on + strand, within trk1 at 463.315 kb on + strand, within trk1 at 463.344 kb on - strand, within trk1 at 463.510 kb on + strand, within trk1 at 463.601 kb on + strand, within trk1 at 463.606 kb on + strand, within trk1 at 463.614 kb on - strand, within trk1 at 463.648 kb on + strand at 463.653 kb on + strand at 463.655 kb on + strand at 463.661 kb on - strand at 463.663 kb on - strand at 463.678 kb on - strand at 463.678 kb on - strand at 463.740 kb on - strand at 463.752 kb on + strand at 463.757 kb on + strand at 463.765 kb on - strand at 463.826 kb on - strand at 463.843 kb on + strand at 463.926 kb on + strand at 463.952 kb on + strand at 464.004 kb on - strand, within tme at 464.034 kb on + strand, within tme at 464.037 kb on - strand, within tme at 464.063 kb on - strand, within tme at 464.099 kb on + strand, within tme at 464.107 kb on - strand, within tme at 464.157 kb on + strand, within tme at 464.157 kb on + strand, within tme at 464.157 kb on + strand, within tme at 464.157 kb on + strand, within tme at 464.373 kb on - strand, within tme at 464.386 kb on - strand, within tme at 464.420 kb on - strand, within tme at 464.435 kb on - strand, within tme at 464.519 kb on - strand, within tme at 464.520 kb on - strand, within tme at 464.580 kb on - strand, within tme at 464.715 kb on - strand, within tme
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 461,480 - DVU0411 0.89 -0.1 461,504 + -0.1 461,512 - +0.0 461,521 + -0.7 461,539 - -2.1 461,634 + -0.2 461,816 + DVU0412 0.19 +0.6 461,824 - DVU0412 0.20 -0.9 461,903 + DVU0412 0.32 -1.6 461,965 - DVU0412 0.42 +1.1 462,012 - DVU0412 0.49 -0.8 462,046 + DVU0412 0.54 -0.2 462,046 + DVU0412 0.54 +0.1 462,054 - DVU0412 0.55 -2.1 462,054 - DVU0412 0.55 -2.4 462,054 - DVU0412 0.55 +1.1 462,054 - DVU0412 0.55 +0.9 462,181 - DVU0412 0.74 -2.5 462,239 + DVU0412 0.83 -1.5 462,239 + DVU0412 0.83 -0.2 462,274 + DVU0412 0.88 -1.2 462,329 - -0.7 462,360 + +0.2 462,368 - +0.5 462,591 - trk1 DVU0413 0.13 -2.9 462,599 - trk1 DVU0413 0.14 -1.0 462,599 - trk1 DVU0413 0.14 +1.1 462,599 - trk1 DVU0413 0.14 +2.1 462,609 - trk1 DVU0413 0.15 +2.1 462,609 - trk1 DVU0413 0.15 +0.6 462,653 - trk1 DVU0413 0.18 -0.2 462,747 + trk1 DVU0413 0.25 -1.3 462,755 - trk1 DVU0413 0.26 +0.3 462,784 + trk1 DVU0413 0.28 -1.9 462,784 + trk1 DVU0413 0.28 -1.2 462,792 - trk1 DVU0413 0.28 -0.6 462,792 - trk1 DVU0413 0.28 -0.7 462,792 - trk1 DVU0413 0.28 -3.4 462,818 + trk1 DVU0413 0.30 -1.7 462,897 - trk1 DVU0413 0.36 -1.6 462,961 + trk1 DVU0413 0.41 -0.9 462,969 - trk1 DVU0413 0.42 -2.0 462,969 - trk1 DVU0413 0.42 -1.5 462,969 - trk1 DVU0413 0.42 -1.2 462,978 - trk1 DVU0413 0.42 -2.7 462,996 + trk1 DVU0413 0.44 -0.6 463,029 + trk1 DVU0413 0.46 +0.7 463,072 - trk1 DVU0413 0.49 -0.6 463,087 - trk1 DVU0413 0.51 -1.4 463,145 + trk1 DVU0413 0.55 -1.3 463,189 - trk1 DVU0413 0.58 -2.3 463,302 + trk1 DVU0413 0.67 -1.2 463,315 + trk1 DVU0413 0.68 -2.7 463,344 - trk1 DVU0413 0.70 -1.1 463,510 + trk1 DVU0413 0.82 -1.4 463,601 + trk1 DVU0413 0.89 -0.2 463,606 + trk1 DVU0413 0.89 -1.1 463,614 - trk1 DVU0413 0.90 -0.9 463,648 + -0.4 463,653 + -0.2 463,655 + -2.3 463,661 - -0.5 463,663 - -1.4 463,678 - -0.8 463,678 - -0.9 463,740 - -0.8 463,752 + -1.1 463,757 + -1.5 463,765 - -2.0 463,826 - +0.2 463,843 + -2.0 463,926 + -3.4 463,952 + -1.2 464,004 - tme DVU0414 0.10 +0.8 464,034 + tme DVU0414 0.13 -0.2 464,037 - tme DVU0414 0.13 -1.0 464,063 - tme DVU0414 0.15 -1.3 464,099 + tme DVU0414 0.18 -0.4 464,107 - tme DVU0414 0.18 +1.2 464,157 + tme DVU0414 0.22 -1.2 464,157 + tme DVU0414 0.22 -0.5 464,157 + tme DVU0414 0.22 +0.2 464,157 + tme DVU0414 0.22 -0.5 464,373 - tme DVU0414 0.38 -2.1 464,386 - tme DVU0414 0.39 -0.9 464,420 - tme DVU0414 0.42 -1.3 464,435 - tme DVU0414 0.43 -1.8 464,519 - tme DVU0414 0.49 -2.4 464,520 - tme DVU0414 0.49 -0.9 464,580 - tme DVU0414 0.54 -2.0 464,715 - tme DVU0414 0.64 -3.2
Or see this region's nucleotide sequence