Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0323

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteno and folD are separated by 212 nucleotidesfolD and hypD are separated by 449 nucleotides DVU0322: eno - enolase (TIGR), at 365,096 to 366,409 eno DVU0323: folD - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (TIGR), at 366,622 to 367,482 folD DVU0325: hypD - hydrogenase expression/formation protein HypD (TIGR), at 367,932 to 369,029 hypD Position (kb) 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2at 366.464 kb on - strandat 366.464 kb on - strandat 366.464 kb on - strandat 366.529 kb on - strandat 366.583 kb on - strandat 366.610 kb on + strandat 367.477 kb on + strandat 367.487 kb on - strandat 367.529 kb on - strandat 367.592 kb on - strandat 367.723 kb on - strandat 367.730 kb on - strandat 367.748 kb on + strandat 367.750 kb on + strandat 367.758 kb on + strandat 367.886 kb on - strandat 367.903 kb on - strandat 368.041 kb on + strandat 368.169 kb on - strand, within hypD

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
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366,464 - -2.0
366,464 - +0.1
366,464 - -0.1
366,529 - -1.2
366,583 - -1.0
366,610 + -2.6
367,477 + -0.2
367,487 - +0.4
367,529 - +2.4
367,592 - +1.8
367,723 - -0.4
367,730 - +2.1
367,748 + -2.0
367,750 + -1.7
367,758 + -1.5
367,886 - -2.5
367,903 - -0.7
368,041 + +0.1
368,169 - hypD DVU0325 0.22 +1.6

Or see this region's nucleotide sequence