Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0162

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurF and carB are separated by 27 nucleotidescarB and DVU0163 are separated by 438 nucleotides DVU0161: purF - amidophosphoribosyltransferase (TIGR), at 198,445 to 199,833 purF DVU0162: carB - carbamoyl-phosphate synthase, large subunit (TIGR), at 199,861 to 203,094 carB DVU0163: DVU0163 - lipoprotein, putative (TIGR), at 203,533 to 204,093 DVU0163 Position (kb) 199 200 201 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2 3at 199.066 kb on + strand, within purFat 199.546 kb on - strand, within purFat 199.625 kb on + strand, within purFat 199.744 kb on + strandat 199.866 kb on + strandat 203.740 kb on + strand, within DVU0163at 203.887 kb on - strand, within DVU0163at 203.955 kb on - strand, within DVU0163at 204.002 kb on + strand, within DVU0163at 204.004 kb on - strand, within DVU0163at 204.057 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
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199,066 + purF DVU0161 0.45 +3.6
199,546 - purF DVU0161 0.79 +0.0
199,625 + purF DVU0161 0.85 +2.0
199,744 + -1.0
199,866 + -0.8
203,740 + DVU0163 0.37 -0.2
203,887 - DVU0163 0.63 +0.9
203,955 - DVU0163 0.75 -2.3
204,002 + DVU0163 0.84 +0.5
204,004 - DVU0163 0.84 -2.5
204,057 + -2.7

Or see this region's nucleotide sequence