Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0130

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0129 and DORF25842 are separated by 50 nucleotidesDORF25842 and DVU0130 are separated by 8 nucleotidesDVU0130 and DVU0132 are separated by 542 nucleotides DVU0129: DVU0129 - sensory box/HDIG domain protein (TIGR), at 165,493 to 166,851 DVU0129 DORF25842: DORF25842 - no description, at 166,902 to 167,021 DORF25842 DVU0130: DVU0130 - phosphoglycolate phosphatase, putative (TIGR), at 167,030 to 167,692 DVU0130 DVU0132: DVU0132 - membrane protein, putative (TIGR), at 168,235 to 169,359 DVU0132 Position (kb) 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.133 kb on + strand, within DVU0129at 166.133 kb on + strand, within DVU0129at 166.152 kb on - strand, within DVU0129at 166.172 kb on - strand, within DVU0129at 166.278 kb on - strand, within DVU0129at 166.289 kb on + strand, within DVU0129at 166.385 kb on + strand, within DVU0129at 166.455 kb on + strand, within DVU0129at 166.463 kb on - strand, within DVU0129at 166.464 kb on + strand, within DVU0129at 166.510 kb on + strand, within DVU0129at 166.517 kb on + strand, within DVU0129at 166.523 kb on - strand, within DVU0129at 166.528 kb on - strand, within DVU0129at 166.533 kb on - strand, within DVU0129at 166.544 kb on + strand, within DVU0129at 166.557 kb on + strand, within DVU0129at 166.595 kb on + strand, within DVU0129at 166.735 kb on + strandat 166.770 kb on + strandat 166.780 kb on + strandat 166.788 kb on - strandat 166.788 kb on - strandat 166.839 kb on - strandat 166.882 kb on - strandat 166.896 kb on + strandat 166.907 kb on + strandat 166.917 kb on + strand, within DORF25842at 166.917 kb on + strand, within DORF25842at 166.917 kb on + strand, within DORF25842at 166.917 kb on + strand, within DORF25842at 166.925 kb on - strand, within DORF25842at 166.925 kb on - strand, within DORF25842at 166.925 kb on - strand, within DORF25842at 166.925 kb on - strand, within DORF25842at 166.986 kb on + strand, within DORF25842at 166.986 kb on + strand, within DORF25842at 166.994 kb on - strand, within DORF25842at 167.012 kb on - strandat 167.036 kb on - strandat 167.133 kb on + strand, within DVU0130at 167.148 kb on + strand, within DVU0130at 167.175 kb on - strand, within DVU0130at 167.194 kb on - strand, within DVU0130at 167.240 kb on + strand, within DVU0130at 167.245 kb on - strand, within DVU0130at 167.248 kb on - strand, within DVU0130at 167.308 kb on - strand, within DVU0130at 167.343 kb on + strand, within DVU0130at 167.350 kb on + strand, within DVU0130at 167.351 kb on - strand, within DVU0130at 167.381 kb on - strand, within DVU0130at 167.381 kb on - strand, within DVU0130at 167.398 kb on + strand, within DVU0130at 167.456 kb on + strand, within DVU0130at 167.464 kb on - strand, within DVU0130at 167.492 kb on - strand, within DVU0130at 167.497 kb on - strand, within DVU0130at 167.500 kb on + strand, within DVU0130at 167.513 kb on - strand, within DVU0130at 167.528 kb on + strand, within DVU0130at 167.528 kb on + strand, within DVU0130at 167.698 kb on + strandat 167.706 kb on - strandat 167.706 kb on - strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.723 kb on - strandat 167.723 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.769 kb on - strandat 167.784 kb on + strandat 168.046 kb on + strandat 168.073 kb on + strandat 168.196 kb on - strandat 168.347 kb on + strandat 168.380 kb on + strand, within DVU0132at 168.403 kb on + strand, within DVU0132at 168.432 kb on + strand, within DVU0132at 168.432 kb on + strand, within DVU0132at 168.440 kb on - strand, within DVU0132at 168.494 kb on + strand, within DVU0132at 168.581 kb on - strand, within DVU0132at 168.603 kb on + strand, within DVU0132

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
remove
166,133 + DVU0129 0.47 -2.0
166,133 + DVU0129 0.47 +0.1
166,152 - DVU0129 0.48 -0.1
166,172 - DVU0129 0.50 -0.3
166,278 - DVU0129 0.58 -0.1
166,289 + DVU0129 0.59 -0.1
166,385 + DVU0129 0.66 +1.9
166,455 + DVU0129 0.71 -0.2
166,463 - DVU0129 0.71 -1.6
166,464 + DVU0129 0.71 +1.7
166,510 + DVU0129 0.75 +0.2
166,517 + DVU0129 0.75 +0.4
166,523 - DVU0129 0.76 -1.0
166,528 - DVU0129 0.76 -1.8
166,533 - DVU0129 0.77 -1.8
166,544 + DVU0129 0.77 -1.0
166,557 + DVU0129 0.78 +0.7
166,595 + DVU0129 0.81 -0.8
166,735 + -1.8
166,770 + -0.6
166,780 + -2.3
166,788 - +0.8
166,788 - +2.6
166,839 - -1.0
166,882 - +0.4
166,896 + -0.5
166,907 + -1.1
166,917 + DORF25842 0.12 -0.1
166,917 + DORF25842 0.12 +0.1
166,917 + DORF25842 0.12 -0.9
166,917 + DORF25842 0.12 -2.9
166,925 - DORF25842 0.19 -0.7
166,925 - DORF25842 0.19 +1.2
166,925 - DORF25842 0.19 -0.6
166,925 - DORF25842 0.19 -2.9
166,986 + DORF25842 0.70 -0.1
166,986 + DORF25842 0.70 +1.2
166,994 - DORF25842 0.77 -2.5
167,012 - -0.4
167,036 - -1.8
167,133 + DVU0130 0.16 -1.4
167,148 + DVU0130 0.18 -0.8
167,175 - DVU0130 0.22 -1.8
167,194 - DVU0130 0.25 -1.0
167,240 + DVU0130 0.32 -1.1
167,245 - DVU0130 0.32 -1.6
167,248 - DVU0130 0.33 -1.9
167,308 - DVU0130 0.42 -0.6
167,343 + DVU0130 0.47 +1.4
167,350 + DVU0130 0.48 -1.6
167,351 - DVU0130 0.48 -2.0
167,381 - DVU0130 0.53 -2.0
167,381 - DVU0130 0.53 +0.4
167,398 + DVU0130 0.56 -1.2
167,456 + DVU0130 0.64 -1.9
167,464 - DVU0130 0.65 -1.0
167,492 - DVU0130 0.70 -0.3
167,497 - DVU0130 0.70 -0.0
167,500 + DVU0130 0.71 -2.0
167,513 - DVU0130 0.73 -1.3
167,528 + DVU0130 0.75 -1.2
167,528 + DVU0130 0.75 -1.3
167,698 + -2.2
167,706 - +0.1
167,706 - +1.4
167,720 + -2.0
167,720 + -0.7
167,720 + +0.1
167,720 + -0.9
167,723 - -0.3
167,723 - -0.7
167,728 - -0.5
167,728 - +1.2
167,728 - +0.3
167,728 - -1.8
167,769 - -2.3
167,784 + -3.1
168,046 + -0.1
168,073 + -1.6
168,196 - -2.8
168,347 + +1.7
168,380 + DVU0132 0.13 +0.4
168,403 + DVU0132 0.15 -1.3
168,432 + DVU0132 0.18 +0.6
168,432 + DVU0132 0.18 -1.0
168,440 - DVU0132 0.18 -2.9
168,494 + DVU0132 0.23 -0.0
168,581 - DVU0132 0.31 -0.8
168,603 + DVU0132 0.33 -2.4

Or see this region's nucleotide sequence