Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0119 and DVU0120 overlap by 4 nucleotides DVU0120 and DVU0121 are separated by 49 nucleotides DVU0121 and DVU0122 are separated by 81 nucleotides DVU0122 and DVU0123 are separated by 12 nucleotides
DVU0119: DVU0119 - sensor histidine kinase (TIGR), at 153,408 to 155,072
DVU0119
DVU0120: DVU0120 - ABC transporter, substrate-binding protein, putative (TIGR), at 155,069 to 156,007
DVU0120
DVU0121: DVU0121 - conserved hypothetical protein (TIGR), at 156,057 to 156,500
DVU0121
DVU0122: DVU0122 - hypothetical protein (TIGR), at 156,582 to 156,680
DVU0122
DVU0123: DVU0123 - membrane protein, putative (TIGR), at 156,693 to 157,775
DVU0123
Position (kb) 155
156
157 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 154.083 kb on + strand, within DVU0119 at 154.083 kb on + strand, within DVU0119 at 154.083 kb on + strand, within DVU0119 at 154.091 kb on - strand, within DVU0119 at 154.091 kb on - strand, within DVU0119 at 154.091 kb on - strand, within DVU0119 at 154.240 kb on + strand, within DVU0119 at 154.280 kb on + strand, within DVU0119 at 154.284 kb on - strand, within DVU0119 at 154.318 kb on + strand, within DVU0119 at 154.343 kb on + strand, within DVU0119 at 154.361 kb on - strand, within DVU0119 at 154.386 kb on + strand, within DVU0119 at 154.434 kb on - strand, within DVU0119 at 154.473 kb on + strand, within DVU0119 at 154.525 kb on - strand, within DVU0119 at 154.530 kb on - strand, within DVU0119 at 154.538 kb on - strand, within DVU0119 at 154.538 kb on - strand, within DVU0119 at 154.543 kb on - strand, within DVU0119 at 154.543 kb on - strand, within DVU0119 at 154.571 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.649 kb on - strand, within DVU0119 at 154.659 kb on - strand, within DVU0119 at 154.663 kb on + strand, within DVU0119 at 154.666 kb on - strand, within DVU0119 at 154.671 kb on - strand, within DVU0119 at 154.676 kb on - strand, within DVU0119 at 154.858 kb on - strand, within DVU0119 at 154.859 kb on + strand, within DVU0119 at 154.884 kb on - strand, within DVU0119 at 154.918 kb on + strand at 154.936 kb on + strand at 154.954 kb on + strand at 154.962 kb on - strand at 155.047 kb on + strand at 155.055 kb on - strand at 155.101 kb on + strand at 155.121 kb on - strand at 155.140 kb on - strand at 155.152 kb on - strand at 155.206 kb on + strand, within DVU0120 at 155.246 kb on - strand, within DVU0120 at 155.309 kb on - strand, within DVU0120 at 155.325 kb on + strand, within DVU0120 at 155.333 kb on - strand, within DVU0120 at 155.338 kb on + strand, within DVU0120 at 155.338 kb on + strand, within DVU0120 at 155.363 kb on - strand, within DVU0120 at 155.368 kb on - strand, within DVU0120 at 155.399 kb on - strand, within DVU0120 at 155.458 kb on - strand, within DVU0120 at 155.460 kb on - strand, within DVU0120 at 155.482 kb on + strand, within DVU0120 at 155.518 kb on - strand, within DVU0120 at 155.541 kb on + strand, within DVU0120 at 155.597 kb on + strand, within DVU0120 at 155.634 kb on + strand, within DVU0120 at 155.642 kb on - strand, within DVU0120 at 155.663 kb on - strand, within DVU0120 at 155.716 kb on + strand, within DVU0120 at 155.716 kb on + strand, within DVU0120 at 155.724 kb on - strand, within DVU0120 at 155.724 kb on - strand, within DVU0120 at 155.805 kb on + strand, within DVU0120 at 155.832 kb on + strand, within DVU0120 at 155.866 kb on - strand, within DVU0120 at 155.886 kb on + strand, within DVU0120 at 155.936 kb on + strand at 155.936 kb on + strand at 155.944 kb on - strand at 155.944 kb on - strand at 155.989 kb on + strand at 155.997 kb on - strand at 156.062 kb on - strand at 156.075 kb on + strand at 156.101 kb on - strand at 156.128 kb on - strand, within DVU0121 at 156.133 kb on + strand, within DVU0121 at 156.147 kb on + strand, within DVU0121 at 156.157 kb on + strand, within DVU0121 at 156.160 kb on - strand, within DVU0121 at 156.171 kb on + strand, within DVU0121 at 156.194 kb on - strand, within DVU0121 at 156.199 kb on - strand, within DVU0121 at 156.228 kb on - strand, within DVU0121 at 156.296 kb on + strand, within DVU0121 at 156.339 kb on - strand, within DVU0121 at 156.377 kb on + strand, within DVU0121 at 156.452 kb on - strand, within DVU0121 at 156.463 kb on - strand at 156.464 kb on + strand at 156.480 kb on + strand at 156.480 kb on + strand at 156.480 kb on + strand at 156.502 kb on + strand at 156.510 kb on - strand at 156.690 kb on + strand at 156.741 kb on - strand at 156.743 kb on - strand at 156.855 kb on + strand, within DVU0123 at 156.864 kb on + strand, within DVU0123 at 156.885 kb on - strand, within DVU0123 at 156.985 kb on + strand, within DVU0123
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 154,083 + DVU0119 0.41 -0.1 154,083 + DVU0119 0.41 +0.7 154,083 + DVU0119 0.41 +0.3 154,091 - DVU0119 0.41 +0.2 154,091 - DVU0119 0.41 -1.4 154,091 - DVU0119 0.41 -1.8 154,240 + DVU0119 0.50 +0.4 154,280 + DVU0119 0.52 -0.8 154,284 - DVU0119 0.53 +0.6 154,318 + DVU0119 0.55 -1.7 154,343 + DVU0119 0.56 -0.6 154,361 - DVU0119 0.57 -2.4 154,386 + DVU0119 0.59 -1.3 154,434 - DVU0119 0.62 +0.4 154,473 + DVU0119 0.64 +0.3 154,525 - DVU0119 0.67 +2.0 154,530 - DVU0119 0.67 +0.6 154,538 - DVU0119 0.68 -2.2 154,538 - DVU0119 0.68 -1.5 154,543 - DVU0119 0.68 -1.7 154,543 - DVU0119 0.68 -2.0 154,571 - DVU0119 0.70 -0.9 154,649 - DVU0119 0.75 -1.7 154,649 - DVU0119 0.75 -2.9 154,649 - DVU0119 0.75 -2.4 154,649 - DVU0119 0.75 -1.1 154,649 - DVU0119 0.75 -0.7 154,659 - DVU0119 0.75 +0.3 154,663 + DVU0119 0.75 -0.2 154,666 - DVU0119 0.76 +0.2 154,671 - DVU0119 0.76 +0.3 154,676 - DVU0119 0.76 -0.5 154,858 - DVU0119 0.87 +0.4 154,859 + DVU0119 0.87 +0.5 154,884 - DVU0119 0.89 +1.0 154,918 + -2.0 154,936 + -0.3 154,954 + +0.9 154,962 - -0.2 155,047 + -1.5 155,055 - -0.9 155,101 + +0.2 155,121 - -0.0 155,140 - +0.5 155,152 - -1.8 155,206 + DVU0120 0.15 -1.1 155,246 - DVU0120 0.19 -0.4 155,309 - DVU0120 0.26 -0.5 155,325 + DVU0120 0.27 +0.2 155,333 - DVU0120 0.28 -3.8 155,338 + DVU0120 0.29 -0.3 155,338 + DVU0120 0.29 -0.9 155,363 - DVU0120 0.31 +0.6 155,368 - DVU0120 0.32 -2.2 155,399 - DVU0120 0.35 +1.1 155,458 - DVU0120 0.41 +0.8 155,460 - DVU0120 0.42 -1.0 155,482 + DVU0120 0.44 -1.8 155,518 - DVU0120 0.48 -1.0 155,541 + DVU0120 0.50 -2.5 155,597 + DVU0120 0.56 -0.2 155,634 + DVU0120 0.60 -0.1 155,642 - DVU0120 0.61 -0.5 155,663 - DVU0120 0.63 -3.0 155,716 + DVU0120 0.69 +1.4 155,716 + DVU0120 0.69 -0.8 155,724 - DVU0120 0.70 +0.7 155,724 - DVU0120 0.70 +0.7 155,805 + DVU0120 0.78 -0.6 155,832 + DVU0120 0.81 +0.6 155,866 - DVU0120 0.85 -0.0 155,886 + DVU0120 0.87 +0.6 155,936 + -2.1 155,936 + -0.3 155,944 - -0.1 155,944 - -1.2 155,989 + +0.2 155,997 - -0.6 156,062 - -3.5 156,075 + -1.9 156,101 - +1.4 156,128 - DVU0121 0.16 +1.3 156,133 + DVU0121 0.17 -0.8 156,147 + DVU0121 0.20 -0.0 156,157 + DVU0121 0.23 -1.0 156,160 - DVU0121 0.23 -1.2 156,171 + DVU0121 0.26 -0.0 156,194 - DVU0121 0.31 -0.1 156,199 - DVU0121 0.32 +1.1 156,228 - DVU0121 0.39 -2.1 156,296 + DVU0121 0.54 -0.4 156,339 - DVU0121 0.64 +0.3 156,377 + DVU0121 0.72 -2.0 156,452 - DVU0121 0.89 +0.9 156,463 - +0.8 156,464 + +0.2 156,480 + -0.7 156,480 + -2.1 156,480 + -2.0 156,502 + +1.2 156,510 - +0.1 156,690 + +0.6 156,741 - +0.6 156,743 - -1.2 156,855 + DVU0123 0.15 -2.0 156,864 + DVU0123 0.16 +0.3 156,885 - DVU0123 0.18 +0.1 156,985 + DVU0123 0.27 -1.2
Or see this region's nucleotide sequence