Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mpg and DVU0073 are separated by 9 nucleotides DVU0073 and DVU0074 overlap by 13 nucleotides DVU0074 and rfbE are separated by 333 nucleotides
DVU0072: mpg - glucose-1-phosphate cytidylyl-transferase (TIGR), at 89,105 to 89,884
mpg
DVU0073: DVU0073 - CDP-glucose-4,6-dehydratase, putative (TIGR), at 89,894 to 91,000
DVU0073
DVU0074: DVU0074 - polysaccharide biosynthesis domain protein (TIGR), at 90,988 to 91,431
DVU0074
DVU0075: rfbE - aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR), at 91,765 to 92,898
rfbE
Position (kb) 89
90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 88.899 kb on - strand at 88.902 kb on + strand at 89.032 kb on + strand at 89.071 kb on - strand at 89.102 kb on - strand at 91.091 kb on - strand, within DVU0074 at 91.125 kb on - strand, within DVU0074 at 91.170 kb on - strand, within DVU0074 at 91.191 kb on + strand, within DVU0074 at 91.191 kb on + strand, within DVU0074 at 91.191 kb on + strand, within DVU0074 at 91.199 kb on - strand, within DVU0074 at 91.199 kb on - strand, within DVU0074 at 91.199 kb on - strand, within DVU0074 at 91.246 kb on + strand, within DVU0074 at 91.381 kb on - strand, within DVU0074 at 91.459 kb on - strand at 91.497 kb on + strand at 91.520 kb on + strand at 91.520 kb on + strand at 91.562 kb on + strand at 91.570 kb on - strand at 91.585 kb on - strand at 91.585 kb on - strand at 91.599 kb on - strand at 91.611 kb on + strand at 91.619 kb on - strand at 91.637 kb on - strand at 91.664 kb on + strand at 91.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 88,899 - +3.5 88,902 + +1.0 89,032 + +0.7 89,071 - +0.6 89,102 - -2.1 91,091 - DVU0074 0.23 -0.0 91,125 - DVU0074 0.31 -2.2 91,170 - DVU0074 0.41 -0.8 91,191 + DVU0074 0.46 -2.0 91,191 + DVU0074 0.46 -1.9 91,191 + DVU0074 0.46 -1.3 91,199 - DVU0074 0.48 -1.5 91,199 - DVU0074 0.48 -2.9 91,199 - DVU0074 0.48 -0.9 91,246 + DVU0074 0.58 -1.3 91,381 - DVU0074 0.89 -2.8 91,459 - -3.6 91,497 + -0.0 91,520 + +0.4 91,520 + -0.8 91,562 + -0.3 91,570 - -1.0 91,585 - -0.3 91,585 - -2.8 91,599 - -0.4 91,611 + +0.2 91,619 - -1.2 91,637 - +0.8 91,664 + +1.6 91,728 - -0.0
Or see this region's nucleotide sequence