Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0072

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdinP and mpg are separated by 405 nucleotidesmpg and DVU0073 are separated by 9 nucleotides DVU0071: dinP - DNA polymerase IV (TIGR), at 87,539 to 88,699 dinP DVU0072: mpg - glucose-1-phosphate cytidylyl-transferase (TIGR), at 89,105 to 89,884 mpg DVU0073: DVU0073 - CDP-glucose-4,6-dehydratase, putative (TIGR), at 89,894 to 91,000 DVU0073 Position (kb) 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 88.106 kb on - strand, within dinPat 88.106 kb on - strand, within dinPat 88.141 kb on - strand, within dinPat 88.141 kb on - strand, within dinPat 88.156 kb on - strand, within dinPat 88.156 kb on - strand, within dinPat 88.182 kb on + strand, within dinPat 88.192 kb on + strand, within dinPat 88.200 kb on - strand, within dinPat 88.217 kb on - strand, within dinPat 88.257 kb on + strand, within dinPat 88.265 kb on - strand, within dinPat 88.265 kb on - strand, within dinPat 88.332 kb on - strand, within dinPat 88.422 kb on + strand, within dinPat 88.432 kb on + strand, within dinPat 88.432 kb on + strand, within dinPat 88.440 kb on - strand, within dinPat 88.459 kb on - strand, within dinPat 88.479 kb on - strand, within dinPat 88.497 kb on + strand, within dinPat 88.505 kb on - strand, within dinPat 88.505 kb on - strand, within dinPat 88.633 kb on - strandat 88.702 kb on - strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.723 kb on - strandat 88.723 kb on - strandat 88.723 kb on - strandat 88.723 kb on - strandat 88.848 kb on - strandat 88.891 kb on + strandat 88.899 kb on - strandat 88.902 kb on + strandat 89.032 kb on + strandat 89.071 kb on - strandat 89.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
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88,106 - dinP DVU0071 0.49 -3.1
88,106 - dinP DVU0071 0.49 +0.9
88,141 - dinP DVU0071 0.52 -0.6
88,141 - dinP DVU0071 0.52 -0.6
88,156 - dinP DVU0071 0.53 -0.3
88,156 - dinP DVU0071 0.53 +1.3
88,182 + dinP DVU0071 0.55 +0.9
88,192 + dinP DVU0071 0.56 -1.5
88,200 - dinP DVU0071 0.57 -1.4
88,217 - dinP DVU0071 0.58 +1.0
88,257 + dinP DVU0071 0.62 -0.0
88,265 - dinP DVU0071 0.63 -1.4
88,265 - dinP DVU0071 0.63 +0.6
88,332 - dinP DVU0071 0.68 -2.9
88,422 + dinP DVU0071 0.76 -0.6
88,432 + dinP DVU0071 0.77 +1.8
88,432 + dinP DVU0071 0.77 -1.3
88,440 - dinP DVU0071 0.78 -1.1
88,459 - dinP DVU0071 0.79 -0.8
88,479 - dinP DVU0071 0.81 -1.6
88,497 + dinP DVU0071 0.83 -2.4
88,505 - dinP DVU0071 0.83 +0.5
88,505 - dinP DVU0071 0.83 -0.9
88,633 - +0.0
88,702 - -2.2
88,715 + +0.6
88,715 + -2.3
88,715 + +0.4
88,715 + -2.1
88,715 + -0.0
88,715 + +0.7
88,715 + -0.9
88,723 - +0.3
88,723 - +0.5
88,723 - -0.0
88,723 - +0.4
88,848 - +0.3
88,891 + +0.4
88,899 - +3.5
88,902 + +1.0
89,032 + +0.7
89,071 - +0.6
89,102 - -2.1

Or see this region's nucleotide sequence