Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1628

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF36392 and DVU1627 overlap by 4 nucleotidesDVU1627 and rpoN are separated by 143 nucleotidesrpoN and yfiA are separated by 58 nucleotidesyfiA and ptsN are separated by 9 nucleotides DORF36392: DORF36392 - SEED: FIG00606507: hypothetical protein, at 1,710,997 to 1,711,587 DORF36392 DVU1627: DVU1627 - ABC transporter, ATP-binding protein (TIGR), at 1,711,584 to 1,712,309 DVU1627 DVU1628: rpoN - RNA polymerase sigma-54 factor (TIGR), at 1,712,453 to 1,713,883 rpoN DVU1629: yfiA - ribosomal subunit interface protein (TIGR), at 1,713,942 to 1,714,481 yfiA DVU1630: ptsN - PTS system, IIA component (TIGR), at 1,714,491 to 1,714,940 ptsN Position (kb) 1712 1713 1714Strain fitness (log2 ratio) -3 -2 -1 0 1at 1714.137 kb on + strand, within yfiAat 1714.153 kb on - strand, within yfiAat 1714.280 kb on + strand, within yfiAat 1714.301 kb on - strand, within yfiAat 1714.301 kb on - strand, within yfiAat 1714.339 kb on - strand, within yfiAat 1714.461 kb on - strandat 1714.606 kb on - strand, within ptsNat 1714.654 kb on + strand, within ptsNat 1714.705 kb on + strand, within ptsN

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
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1,714,137 + yfiA DVU1629 0.36 +0.1
1,714,153 - yfiA DVU1629 0.39 -0.3
1,714,280 + yfiA DVU1629 0.63 -2.4
1,714,301 - yfiA DVU1629 0.66 +1.7
1,714,301 - yfiA DVU1629 0.66 -3.6
1,714,339 - yfiA DVU1629 0.74 -2.0
1,714,461 - -3.3
1,714,606 - ptsN DVU1630 0.26 -1.3
1,714,654 + ptsN DVU1630 0.36 -0.8
1,714,705 + ptsN DVU1630 0.48 -1.3

Or see this region's nucleotide sequence