Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfbA and rfbC overlap by 4 nucleotides rfbC and DVU0699 are separated by 176 nucleotides
DVU0697: rfbA - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (TIGR), at 771,808 to 773,226
rfbA
DVU0698: rfbC - dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR), at 773,223 to 773,795
rfbC
DVU0699: DVU0699 - sensory box sensor histidine kinase/response regulator, authentic frameshift (TIGR), at 773,972 to 775,650
DVU0699
Position (kb) 773
774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 773.386 kb on - strand, within rfbC at 773.395 kb on + strand, within rfbC at 773.482 kb on - strand, within rfbC at 773.497 kb on - strand, within rfbC at 773.542 kb on - strand, within rfbC at 773.572 kb on - strand, within rfbC at 773.577 kb on - strand, within rfbC at 773.878 kb on - strand at 773.882 kb on + strand at 773.981 kb on + strand at 773.983 kb on + strand at 774.054 kb on - strand at 774.054 kb on - strand at 774.060 kb on - strand at 774.068 kb on + strand at 774.123 kb on + strand at 774.123 kb on + strand at 774.131 kb on - strand at 774.131 kb on - strand at 774.135 kb on + strand at 774.151 kb on + strand, within DVU0699 at 774.158 kb on + strand, within DVU0699 at 774.208 kb on + strand, within DVU0699 at 774.286 kb on + strand, within DVU0699 at 774.323 kb on + strand, within DVU0699 at 774.375 kb on - strand, within DVU0699 at 774.460 kb on + strand, within DVU0699 at 774.540 kb on + strand, within DVU0699 at 774.541 kb on - strand, within DVU0699 at 774.564 kb on + strand, within DVU0699 at 774.567 kb on - strand, within DVU0699 at 774.567 kb on - strand, within DVU0699 at 774.593 kb on + strand, within DVU0699 at 774.685 kb on + strand, within DVU0699 at 774.706 kb on + strand, within DVU0699 at 774.706 kb on + strand, within DVU0699 at 774.716 kb on - strand, within DVU0699
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract remove 773,386 - rfbC DVU0698 0.28 -1.9 773,395 + rfbC DVU0698 0.30 -1.7 773,482 - rfbC DVU0698 0.45 -2.0 773,497 - rfbC DVU0698 0.48 -1.9 773,542 - rfbC DVU0698 0.56 -1.9 773,572 - rfbC DVU0698 0.61 -1.8 773,577 - rfbC DVU0698 0.62 -2.4 773,878 - +0.0 773,882 + -0.3 773,981 + +0.4 773,983 + +0.2 774,054 - +0.5 774,054 - -1.3 774,060 - -0.6 774,068 + -1.5 774,123 + +0.2 774,123 + +0.6 774,131 - +0.7 774,131 - -2.9 774,135 + -1.0 774,151 + DVU0699 0.11 +0.6 774,158 + DVU0699 0.11 +0.4 774,208 + DVU0699 0.14 +0.3 774,286 + DVU0699 0.19 -0.1 774,323 + DVU0699 0.21 +0.3 774,375 - DVU0699 0.24 +0.1 774,460 + DVU0699 0.29 +1.3 774,540 + DVU0699 0.34 -0.2 774,541 - DVU0699 0.34 -0.3 774,564 + DVU0699 0.35 +3.0 774,567 - DVU0699 0.35 +0.2 774,567 - DVU0699 0.35 -1.4 774,593 + DVU0699 0.37 +0.5 774,685 + DVU0699 0.42 -3.9 774,706 + DVU0699 0.44 +2.3 774,706 + DVU0699 0.44 +0.4 774,716 - DVU0699 0.44 -1.7
Or see this region's nucleotide sequence