Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0609 and DVU0610 overlap by 4 nucleotides DVU0610 and DVU0611 are separated by 24 nucleotides DVU0611 and DVU0612 are separated by 15 nucleotides
DVU0609: DVU0609 - lipoprotein, putative (TIGR), at 678,940 to 679,575
DVU0609
DVU0610: DVU0610 - conserved hypothetical protein (TIGR), at 679,572 to 680,492
DVU0610
DVU0611: DVU0611 - ABC transporter, ATP-binding protein (TIGR), at 680,517 to 681,344
DVU0611
DVU0612: DVU0612 - STAS domain protein (TIGR), at 681,360 to 682,565
DVU0612
Position (kb) 680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 679.658 kb on - strand at 679.700 kb on + strand, within DVU0610 at 679.717 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.904 kb on - strand, within DVU0610 at 679.956 kb on - strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.989 kb on - strand, within DVU0610 at 679.989 kb on - strand, within DVU0610 at 679.993 kb on + strand, within DVU0610 at 680.091 kb on + strand, within DVU0610 at 680.099 kb on - strand, within DVU0610 at 680.244 kb on + strand, within DVU0610 at 680.377 kb on - strand, within DVU0610 at 680.537 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.561 kb on - strand at 680.561 kb on - strand at 680.604 kb on - strand, within DVU0611 at 680.614 kb on + strand, within DVU0611 at 680.622 kb on - strand, within DVU0611 at 680.622 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.751 kb on - strand, within DVU0611 at 680.756 kb on - strand, within DVU0611 at 680.804 kb on + strand, within DVU0611 at 680.873 kb on - strand, within DVU0611 at 681.124 kb on - strand, within DVU0611 at 681.127 kb on + strand, within DVU0611 at 681.127 kb on + strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.158 kb on - strand, within DVU0611 at 681.195 kb on - strand, within DVU0611 at 681.229 kb on + strand, within DVU0611 at 681.237 kb on - strand, within DVU0611 at 681.269 kb on - strand at 681.330 kb on + strand at 681.350 kb on + strand at 681.383 kb on - strand at 681.385 kb on + strand at 681.461 kb on + strand at 681.506 kb on - strand, within DVU0612 at 681.574 kb on - strand, within DVU0612 at 681.602 kb on + strand, within DVU0612 at 681.602 kb on + strand, within DVU0612 at 681.610 kb on - strand, within DVU0612 at 681.649 kb on + strand, within DVU0612 at 681.754 kb on + strand, within DVU0612 at 681.754 kb on + strand, within DVU0612 at 681.828 kb on - strand, within DVU0612 at 681.925 kb on - strand, within DVU0612 at 682.050 kb on - strand, within DVU0612 at 682.059 kb on - strand, within DVU0612 at 682.061 kb on + strand, within DVU0612 at 682.160 kb on - strand, within DVU0612 at 682.240 kb on - strand, within DVU0612 at 682.242 kb on + strand, within DVU0612 at 682.250 kb on - strand, within DVU0612 at 682.320 kb on - strand, within DVU0612
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) remove 679,658 - -0.1 679,700 + DVU0610 0.14 -0.8 679,717 - DVU0610 0.16 -0.4 679,763 - DVU0610 0.21 -0.5 679,763 - DVU0610 0.21 +1.6 679,782 - DVU0610 0.23 +0.3 679,782 - DVU0610 0.23 -0.5 679,904 - DVU0610 0.36 -0.6 679,956 - DVU0610 0.42 -0.5 679,981 + DVU0610 0.44 -0.0 679,981 + DVU0610 0.44 -0.3 679,981 + DVU0610 0.44 +1.1 679,981 + DVU0610 0.44 -0.6 679,989 - DVU0610 0.45 -0.3 679,989 - DVU0610 0.45 +1.6 679,993 + DVU0610 0.46 +0.4 680,091 + DVU0610 0.56 -0.4 680,099 - DVU0610 0.57 -0.3 680,244 + DVU0610 0.73 -0.5 680,377 - DVU0610 0.87 -0.6 680,537 + -0.7 680,553 + -0.6 680,553 + -0.2 680,553 + -0.9 680,561 - +1.8 680,561 - -1.3 680,604 - DVU0611 0.11 -0.3 680,614 + DVU0611 0.12 -0.2 680,622 - DVU0611 0.13 -0.3 680,622 - DVU0611 0.13 -0.9 680,665 - DVU0611 0.18 -0.5 680,665 - DVU0611 0.18 -1.6 680,665 - DVU0611 0.18 -0.7 680,751 - DVU0611 0.28 +0.4 680,756 - DVU0611 0.29 -0.5 680,804 + DVU0611 0.35 +0.0 680,873 - DVU0611 0.43 -0.5 681,124 - DVU0611 0.73 -0.6 681,127 + DVU0611 0.74 -0.5 681,127 + DVU0611 0.74 -0.8 681,145 - DVU0611 0.76 -0.5 681,145 - DVU0611 0.76 -0.2 681,145 - DVU0611 0.76 -0.5 681,145 - DVU0611 0.76 -0.7 681,158 - DVU0611 0.77 -0.8 681,195 - DVU0611 0.82 -0.9 681,229 + DVU0611 0.86 +1.8 681,237 - DVU0611 0.87 -0.2 681,269 - -0.1 681,330 + -2.9 681,350 + -0.2 681,383 - +0.1 681,385 + -0.6 681,461 + -0.7 681,506 - DVU0612 0.12 -0.7 681,574 - DVU0612 0.18 -0.7 681,602 + DVU0612 0.20 +1.8 681,602 + DVU0612 0.20 +0.3 681,610 - DVU0612 0.21 -1.1 681,649 + DVU0612 0.24 -0.8 681,754 + DVU0612 0.33 -0.2 681,754 + DVU0612 0.33 -1.3 681,828 - DVU0612 0.39 +1.3 681,925 - DVU0612 0.47 -0.4 682,050 - DVU0612 0.57 -0.3 682,059 - DVU0612 0.58 -0.9 682,061 + DVU0612 0.58 -0.2 682,160 - DVU0612 0.66 +2.0 682,240 - DVU0612 0.73 +0.1 682,242 + DVU0612 0.73 +0.2 682,250 - DVU0612 0.74 -1.7 682,320 - DVU0612 0.80 -1.2
Or see this region's nucleotide sequence