Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0608 and DVU0609 are separated by 155 nucleotides DVU0609 and DVU0610 overlap by 4 nucleotides DVU0610 and DVU0611 are separated by 24 nucleotides
DVU0608: DVU0608 - methyl-accepting chemotaxis protein (TIGR), at 676,751 to 678,784
DVU0608
DVU0609: DVU0609 - lipoprotein, putative (TIGR), at 678,940 to 679,575
DVU0609
DVU0610: DVU0610 - conserved hypothetical protein (TIGR), at 679,572 to 680,492
DVU0610
DVU0611: DVU0611 - ABC transporter, ATP-binding protein (TIGR), at 680,517 to 681,344
DVU0611
Position (kb) 678
679
680 Strain fitness (log2 ratio) -1
0
1
2
3 at 677.940 kb on - strand, within DVU0608 at 677.945 kb on - strand, within DVU0608 at 677.962 kb on + strand, within DVU0608 at 677.986 kb on - strand, within DVU0608 at 677.993 kb on - strand, within DVU0608 at 678.021 kb on + strand, within DVU0608 at 678.029 kb on - strand, within DVU0608 at 678.062 kb on - strand, within DVU0608 at 678.096 kb on + strand, within DVU0608 at 678.096 kb on + strand, within DVU0608 at 678.101 kb on + strand, within DVU0608 at 678.104 kb on - strand, within DVU0608 at 678.104 kb on - strand, within DVU0608 at 678.182 kb on + strand, within DVU0608 at 678.250 kb on - strand, within DVU0608 at 678.450 kb on + strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.487 kb on - strand, within DVU0608 at 678.505 kb on - strand, within DVU0608 at 678.546 kb on + strand, within DVU0608 at 678.554 kb on - strand, within DVU0608 at 678.602 kb on + strand at 678.612 kb on + strand at 678.624 kb on + strand at 678.695 kb on + strand at 678.703 kb on - strand at 678.821 kb on + strand at 678.992 kb on + strand at 679.024 kb on - strand, within DVU0609 at 679.206 kb on - strand, within DVU0609 at 679.384 kb on - strand, within DVU0609 at 679.443 kb on + strand, within DVU0609 at 679.491 kb on + strand, within DVU0609 at 679.658 kb on - strand at 679.700 kb on + strand, within DVU0610 at 679.717 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.904 kb on - strand, within DVU0610 at 679.956 kb on - strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.989 kb on - strand, within DVU0610 at 679.989 kb on - strand, within DVU0610 at 679.993 kb on + strand, within DVU0610 at 680.091 kb on + strand, within DVU0610 at 680.099 kb on - strand, within DVU0610 at 680.244 kb on + strand, within DVU0610 at 680.377 kb on - strand, within DVU0610 at 680.537 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.561 kb on - strand at 680.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) remove 677,940 - DVU0608 0.58 -0.5 677,945 - DVU0608 0.59 +3.6 677,962 + DVU0608 0.60 +0.0 677,986 - DVU0608 0.61 +0.2 677,993 - DVU0608 0.61 +1.4 678,021 + DVU0608 0.62 -0.2 678,029 - DVU0608 0.63 -0.9 678,062 - DVU0608 0.64 -0.2 678,096 + DVU0608 0.66 +1.2 678,096 + DVU0608 0.66 +0.0 678,101 + DVU0608 0.66 -0.3 678,104 - DVU0608 0.67 -0.6 678,104 - DVU0608 0.67 -0.2 678,182 + DVU0608 0.70 -0.2 678,250 - DVU0608 0.74 -0.3 678,450 + DVU0608 0.84 -1.0 678,485 - DVU0608 0.85 +0.2 678,485 - DVU0608 0.85 -0.3 678,485 - DVU0608 0.85 -0.2 678,487 - DVU0608 0.85 -0.6 678,505 - DVU0608 0.86 +0.0 678,546 + DVU0608 0.88 -1.6 678,554 - DVU0608 0.89 +0.4 678,602 + +0.5 678,612 + -0.3 678,624 + -0.3 678,695 + -0.7 678,703 - +0.2 678,821 + -0.6 678,992 + -0.3 679,024 - DVU0609 0.13 -1.2 679,206 - DVU0609 0.42 -0.6 679,384 - DVU0609 0.70 -0.4 679,443 + DVU0609 0.79 -0.5 679,491 + DVU0609 0.87 -0.6 679,658 - -0.1 679,700 + DVU0610 0.14 -0.8 679,717 - DVU0610 0.16 -0.4 679,763 - DVU0610 0.21 -0.5 679,763 - DVU0610 0.21 +1.6 679,782 - DVU0610 0.23 +0.3 679,782 - DVU0610 0.23 -0.5 679,904 - DVU0610 0.36 -0.6 679,956 - DVU0610 0.42 -0.5 679,981 + DVU0610 0.44 -0.0 679,981 + DVU0610 0.44 -0.3 679,981 + DVU0610 0.44 +1.1 679,981 + DVU0610 0.44 -0.6 679,989 - DVU0610 0.45 -0.3 679,989 - DVU0610 0.45 +1.6 679,993 + DVU0610 0.46 +0.4 680,091 + DVU0610 0.56 -0.4 680,099 - DVU0610 0.57 -0.3 680,244 + DVU0610 0.73 -0.5 680,377 - DVU0610 0.87 -0.6 680,537 + -0.7 680,553 + -0.6 680,553 + -0.2 680,553 + -0.9 680,561 - +1.8 680,561 - -1.3
Or see this region's nucleotide sequence