Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0505
Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) |
|---|---|---|---|---|---|
| remove | |||||
| 578,039 | + | truB | DVU0505 | 0.36 | -1.4 |
| 578,061 | - | truB | DVU0505 | 0.38 | -0.4 |
| 578,252 | - | truB | DVU0505 | 0.59 | -0.4 |
| 578,270 | - | truB | DVU0505 | 0.61 | +0.3 |
| 578,339 | + | truB | DVU0505 | 0.69 | -1.4 |
| 578,389 | - | truB | DVU0505 | 0.74 | -0.3 |
| 578,401 | + | truB | DVU0505 | 0.75 | -1.2 |
| 578,423 | - | truB | DVU0505 | 0.78 | -1.1 |
| 578,436 | + | truB | DVU0505 | 0.79 | -1.1 |
| 578,534 | - | truB | DVU0505 | 0.90 | -1.1 |
| 578,580 | + | -1.0 | |||
| 578,593 | - | +0.3 | |||
| 578,642 | - | +0.4 | |||
| 578,654 | - | -1.4 | |||
| 578,729 | - | -1.1 | |||
| 578,781 | - | DVU0506 | 0.15 | -1.0 | |
| 578,846 | + | DVU0506 | 0.21 | +2.0 | |
| 578,936 | - | DVU0506 | 0.30 | -0.5 | |
| 579,160 | + | DVU0506 | 0.53 | -1.2 | |
| 579,224 | + | DVU0506 | 0.59 | -0.2 | |
| 579,372 | + | DVU0506 | 0.74 | -0.4 | |
| 579,372 | + | DVU0506 | 0.74 | +0.0 | |
| 579,388 | + | DVU0506 | 0.76 | -0.9 | |
| 579,429 | - | DVU0506 | 0.80 | -1.7 | |
| 579,429 | - | DVU0506 | 0.80 | +0.7 | |
| 579,429 | - | DVU0506 | 0.80 | -1.0 |
Or see this region's nucleotide sequence