Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0432 and DVU0433 are separated by 12 nucleotides DVU0433 and mnhA overlap by 1 nucleotides mnhA and DVU0436 are separated by 310 nucleotides
DVU0432: DVU0432 - Ech hydrogenase, subunit EchC, putative (TIGR), at 486,305 to 486,778
DVU0432
DVU0433: DVU0433 - Ech hydrogenase, subunit EchB, putative (TIGR), at 486,791 to 487,639
DVU0433
DVU0434: mnhA - Ech hydrogenase, subunit EchA, putative (TIGR), at 487,639 to 489,585
mnhA
DVU0436: DVU0436 - transcriptional regulator, TetR family (TIGR), at 489,896 to 490,600
DVU0436
Position (kb) 487
488
489
490 Strain fitness (log2 ratio) -2
-1
0
1
2 at 486.805 kb on + strand at 486.813 kb on - strand at 486.860 kb on - strand at 486.976 kb on + strand, within DVU0433 at 486.976 kb on + strand, within DVU0433 at 486.994 kb on + strand, within DVU0433 at 487.011 kb on + strand, within DVU0433 at 487.019 kb on - strand, within DVU0433 at 487.019 kb on - strand, within DVU0433 at 487.029 kb on - strand, within DVU0433 at 487.036 kb on - strand, within DVU0433 at 487.067 kb on + strand, within DVU0433 at 487.097 kb on + strand, within DVU0433 at 487.117 kb on + strand, within DVU0433 at 487.125 kb on - strand, within DVU0433 at 487.125 kb on - strand, within DVU0433 at 487.129 kb on + strand, within DVU0433 at 487.131 kb on + strand, within DVU0433 at 487.222 kb on - strand, within DVU0433 at 487.230 kb on - strand, within DVU0433 at 487.280 kb on - strand, within DVU0433 at 487.411 kb on - strand, within DVU0433 at 487.417 kb on + strand, within DVU0433 at 487.446 kb on + strand, within DVU0433 at 487.461 kb on + strand, within DVU0433 at 487.482 kb on + strand, within DVU0433 at 487.500 kb on - strand, within DVU0433 at 487.513 kb on + strand, within DVU0433 at 487.525 kb on - strand, within DVU0433 at 487.611 kb on - strand at 487.637 kb on + strand at 487.671 kb on - strand at 487.728 kb on - strand at 487.764 kb on + strand at 487.820 kb on + strand at 487.925 kb on + strand, within mnhA at 487.925 kb on + strand, within mnhA at 487.950 kb on + strand, within mnhA at 487.964 kb on + strand, within mnhA at 487.977 kb on - strand, within mnhA at 488.014 kb on + strand, within mnhA at 488.017 kb on - strand, within mnhA at 488.118 kb on + strand, within mnhA at 488.128 kb on + strand, within mnhA at 488.141 kb on - strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.153 kb on + strand, within mnhA at 488.161 kb on - strand, within mnhA at 488.161 kb on - strand, within mnhA at 488.168 kb on - strand, within mnhA at 488.172 kb on + strand, within mnhA at 488.237 kb on - strand, within mnhA at 488.352 kb on + strand, within mnhA at 488.398 kb on - strand, within mnhA at 488.550 kb on - strand, within mnhA at 488.552 kb on + strand, within mnhA at 488.559 kb on + strand, within mnhA at 488.585 kb on + strand, within mnhA at 488.611 kb on - strand, within mnhA at 488.611 kb on - strand, within mnhA at 488.621 kb on - strand, within mnhA at 488.629 kb on + strand, within mnhA at 488.663 kb on + strand, within mnhA at 488.663 kb on + strand, within mnhA at 488.671 kb on - strand, within mnhA at 488.671 kb on - strand, within mnhA at 488.671 kb on - strand, within mnhA at 488.673 kb on + strand, within mnhA at 488.673 kb on + strand, within mnhA at 488.675 kb on + strand, within mnhA at 488.683 kb on + strand, within mnhA at 488.683 kb on - strand, within mnhA at 488.691 kb on - strand, within mnhA at 488.701 kb on - strand, within mnhA at 488.713 kb on + strand, within mnhA at 488.720 kb on + strand, within mnhA at 488.789 kb on - strand, within mnhA at 488.799 kb on - strand, within mnhA at 488.848 kb on - strand, within mnhA at 488.853 kb on - strand, within mnhA at 488.929 kb on - strand, within mnhA at 488.955 kb on - strand, within mnhA at 488.980 kb on + strand, within mnhA at 489.081 kb on - strand, within mnhA at 489.105 kb on - strand, within mnhA at 489.207 kb on + strand, within mnhA at 489.299 kb on + strand, within mnhA at 489.307 kb on - strand, within mnhA at 489.376 kb on + strand, within mnhA at 489.385 kb on - strand, within mnhA at 489.431 kb on - strand at 489.437 kb on + strand at 489.455 kb on + strand at 489.455 kb on + strand at 489.657 kb on + strand at 489.669 kb on + strand at 489.884 kb on + strand at 489.891 kb on + strand at 489.930 kb on + strand at 489.935 kb on + strand at 489.943 kb on - strand at 489.943 kb on - strand at 490.119 kb on + strand, within DVU0436 at 490.418 kb on - strand, within DVU0436 at 490.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) remove 486,805 + -1.6 486,813 - -1.1 486,860 - -0.9 486,976 + DVU0433 0.22 -1.9 486,976 + DVU0433 0.22 -0.9 486,994 + DVU0433 0.24 -2.2 487,011 + DVU0433 0.26 -0.9 487,019 - DVU0433 0.27 +0.2 487,019 - DVU0433 0.27 -1.4 487,029 - DVU0433 0.28 -0.1 487,036 - DVU0433 0.29 -1.0 487,067 + DVU0433 0.33 +0.9 487,097 + DVU0433 0.36 -1.1 487,117 + DVU0433 0.38 -0.5 487,125 - DVU0433 0.39 -0.7 487,125 - DVU0433 0.39 -1.1 487,129 + DVU0433 0.40 -0.9 487,131 + DVU0433 0.40 -1.3 487,222 - DVU0433 0.51 -0.9 487,230 - DVU0433 0.52 -1.5 487,280 - DVU0433 0.58 -1.2 487,411 - DVU0433 0.73 -1.1 487,417 + DVU0433 0.74 -0.9 487,446 + DVU0433 0.77 +0.0 487,461 + DVU0433 0.79 +1.8 487,482 + DVU0433 0.81 -1.3 487,500 - DVU0433 0.84 -1.7 487,513 + DVU0433 0.85 -0.7 487,525 - DVU0433 0.86 -0.7 487,611 - -0.9 487,637 + -1.0 487,671 - -0.7 487,728 - -0.8 487,764 + -1.4 487,820 + +0.4 487,925 + mnhA DVU0434 0.15 -0.9 487,925 + mnhA DVU0434 0.15 -0.8 487,950 + mnhA DVU0434 0.16 -1.6 487,964 + mnhA DVU0434 0.17 -0.9 487,977 - mnhA DVU0434 0.17 -0.9 488,014 + mnhA DVU0434 0.19 -0.8 488,017 - mnhA DVU0434 0.19 -1.4 488,118 + mnhA DVU0434 0.25 -0.8 488,128 + mnhA DVU0434 0.25 +0.2 488,141 - mnhA DVU0434 0.26 -0.8 488,153 + mnhA DVU0434 0.26 -0.3 488,153 + mnhA DVU0434 0.26 -0.9 488,153 + mnhA DVU0434 0.26 -1.3 488,153 + mnhA DVU0434 0.26 -0.8 488,161 - mnhA DVU0434 0.27 +0.3 488,161 - mnhA DVU0434 0.27 -2.3 488,168 - mnhA DVU0434 0.27 -1.2 488,172 + mnhA DVU0434 0.27 +0.2 488,237 - mnhA DVU0434 0.31 -2.1 488,352 + mnhA DVU0434 0.37 +0.0 488,398 - mnhA DVU0434 0.39 -1.2 488,550 - mnhA DVU0434 0.47 -0.3 488,552 + mnhA DVU0434 0.47 -0.9 488,559 + mnhA DVU0434 0.47 -0.7 488,585 + mnhA DVU0434 0.49 -1.3 488,611 - mnhA DVU0434 0.50 -0.7 488,611 - mnhA DVU0434 0.50 -2.2 488,621 - mnhA DVU0434 0.50 -0.6 488,629 + mnhA DVU0434 0.51 -0.4 488,663 + mnhA DVU0434 0.53 -0.8 488,663 + mnhA DVU0434 0.53 +0.3 488,671 - mnhA DVU0434 0.53 +0.1 488,671 - mnhA DVU0434 0.53 -1.3 488,671 - mnhA DVU0434 0.53 -1.0 488,673 + mnhA DVU0434 0.53 -1.1 488,673 + mnhA DVU0434 0.53 -1.0 488,675 + mnhA DVU0434 0.53 -0.9 488,683 + mnhA DVU0434 0.54 -0.8 488,683 - mnhA DVU0434 0.54 -1.0 488,691 - mnhA DVU0434 0.54 +0.4 488,701 - mnhA DVU0434 0.55 -0.4 488,713 + mnhA DVU0434 0.55 -0.6 488,720 + mnhA DVU0434 0.56 -0.4 488,789 - mnhA DVU0434 0.59 -0.2 488,799 - mnhA DVU0434 0.60 +0.6 488,848 - mnhA DVU0434 0.62 -0.9 488,853 - mnhA DVU0434 0.62 -0.9 488,929 - mnhA DVU0434 0.66 -1.3 488,955 - mnhA DVU0434 0.68 -1.7 488,980 + mnhA DVU0434 0.69 -0.3 489,081 - mnhA DVU0434 0.74 -1.0 489,105 - mnhA DVU0434 0.75 -0.1 489,207 + mnhA DVU0434 0.81 -0.6 489,299 + mnhA DVU0434 0.85 +0.6 489,307 - mnhA DVU0434 0.86 -1.1 489,376 + mnhA DVU0434 0.89 -0.9 489,385 - mnhA DVU0434 0.90 -1.0 489,431 - -1.6 489,437 + +0.0 489,455 + -2.7 489,455 + +0.4 489,657 + -0.1 489,669 + -1.9 489,884 + +0.1 489,891 + +1.3 489,930 + -0.3 489,935 + +0.1 489,943 - -0.3 489,943 - +2.7 490,119 + DVU0436 0.32 -0.2 490,418 - DVU0436 0.74 -0.3 490,550 + -0.6
Or see this region's nucleotide sequence