Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0388

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglnH and DVU0387 are separated by 141 nucleotidesDVU0387 and DVU0388 are separated by 8 nucleotidesDVU0388 and DVU0389 overlap by 1 nucleotidesDVU0389 and glcD are separated by 25 nucleotides DVU0386: glnH - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 434,628 to 435,377 glnH DVU0387: DVU0387 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 435,519 to 436,196 DVU0387 DVU0388: DVU0388 - amino acid ABC transporter, ATP-binding protein (TIGR), at 436,205 to 436,972 DVU0388 DVU0389: DVU0389 - amino acid ABC tranporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 436,972 to 437,646 DVU0389 DVU0390: glcD - glycolate oxidase, subunit GlcD, putative (TIGR), at 437,672 to 439,054 glcD Position (kb) 436 437Strain fitness (log2 ratio) -1 0 1 2 3at 435.307 kb on - strandat 435.320 kb on + strandat 435.328 kb on - strandat 435.391 kb on + strandat 435.391 kb on - strandat 435.399 kb on - strandat 435.594 kb on + strand, within DVU0387at 435.594 kb on + strand, within DVU0387at 435.594 kb on + strand, within DVU0387at 435.627 kb on + strand, within DVU0387at 435.627 kb on + strand, within DVU0387at 435.650 kb on + strand, within DVU0387at 435.650 kb on + strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.677 kb on - strand, within DVU0387at 435.796 kb on + strand, within DVU0387at 435.852 kb on + strand, within DVU0387at 435.875 kb on + strand, within DVU0387at 435.896 kb on + strand, within DVU0387at 435.920 kb on + strand, within DVU0387at 435.928 kb on - strand, within DVU0387at 435.979 kb on + strand, within DVU0387at 435.987 kb on - strand, within DVU0387at 435.989 kb on + strand, within DVU0387at 436.074 kb on - strand, within DVU0387at 436.112 kb on - strand, within DVU0387at 436.137 kb on - strandat 436.215 kb on + strandat 436.228 kb on - strandat 436.229 kb on - strandat 436.266 kb on + strandat 436.324 kb on - strand, within DVU0388at 436.360 kb on - strand, within DVU0388at 436.360 kb on - strand, within DVU0388at 436.362 kb on + strand, within DVU0388at 436.429 kb on + strand, within DVU0388at 436.429 kb on + strand, within DVU0388at 436.534 kb on + strand, within DVU0388at 436.622 kb on - strand, within DVU0388at 436.627 kb on - strand, within DVU0388at 436.644 kb on - strand, within DVU0388at 436.644 kb on - strand, within DVU0388at 436.681 kb on + strand, within DVU0388at 436.690 kb on + strand, within DVU0388at 436.724 kb on + strand, within DVU0388at 436.731 kb on + strand, within DVU0388at 436.852 kb on - strand, within DVU0388at 436.879 kb on + strand, within DVU0388at 436.976 kb on - strandat 437.016 kb on + strandat 437.018 kb on + strandat 437.071 kb on - strand, within DVU0389at 437.116 kb on + strand, within DVU0389at 437.124 kb on - strand, within DVU0389at 437.154 kb on + strand, within DVU0389at 437.162 kb on - strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.205 kb on + strand, within DVU0389at 437.245 kb on + strand, within DVU0389at 437.260 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.299 kb on + strand, within DVU0389at 437.317 kb on - strand, within DVU0389at 437.320 kb on + strand, within DVU0389at 437.325 kb on + strand, within DVU0389at 437.325 kb on + strand, within DVU0389at 437.333 kb on - strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.499 kb on + strand, within DVU0389at 437.564 kb on - strand, within DVU0389at 437.597 kb on + strandat 437.649 kb on - strandat 437.660 kb on + strandat 437.668 kb on + strandat 437.676 kb on - strandat 437.676 kb on - strandat 437.789 kb on - strandat 437.916 kb on - strand, within glcDat 437.919 kb on + strand, within glcDat 437.937 kb on + strand, within glcD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
remove
435,307 - +0.4
435,320 + +1.8
435,328 - +1.4
435,391 + -0.4
435,391 - +1.3
435,399 - -0.1
435,594 + DVU0387 0.11 +1.0
435,594 + DVU0387 0.11 +0.5
435,594 + DVU0387 0.11 +1.2
435,627 + DVU0387 0.16 +0.5
435,627 + DVU0387 0.16 -1.2
435,650 + DVU0387 0.19 +0.2
435,650 + DVU0387 0.19 +0.6
435,658 - DVU0387 0.21 +0.3
435,658 - DVU0387 0.21 +0.5
435,658 - DVU0387 0.21 +0.3
435,658 - DVU0387 0.21 +0.3
435,658 - DVU0387 0.21 +0.1
435,677 - DVU0387 0.23 +0.1
435,796 + DVU0387 0.41 +1.4
435,852 + DVU0387 0.49 +0.5
435,875 + DVU0387 0.53 +3.6
435,896 + DVU0387 0.56 +0.4
435,920 + DVU0387 0.59 +0.8
435,928 - DVU0387 0.60 +0.6
435,979 + DVU0387 0.68 +0.5
435,987 - DVU0387 0.69 +1.0
435,989 + DVU0387 0.69 +2.3
436,074 - DVU0387 0.82 +1.2
436,112 - DVU0387 0.87 +0.4
436,137 - -0.4
436,215 + +0.4
436,228 - -0.4
436,229 - +1.9
436,266 + +0.5
436,324 - DVU0388 0.15 -1.0
436,360 - DVU0388 0.20 +1.2
436,360 - DVU0388 0.20 +0.2
436,362 + DVU0388 0.20 +1.0
436,429 + DVU0388 0.29 +0.7
436,429 + DVU0388 0.29 +0.4
436,534 + DVU0388 0.43 +2.9
436,622 - DVU0388 0.54 +0.1
436,627 - DVU0388 0.55 +0.5
436,644 - DVU0388 0.57 +0.4
436,644 - DVU0388 0.57 +0.4
436,681 + DVU0388 0.62 +0.5
436,690 + DVU0388 0.63 +0.6
436,724 + DVU0388 0.68 +0.7
436,731 + DVU0388 0.68 +0.2
436,852 - DVU0388 0.84 +0.5
436,879 + DVU0388 0.88 +1.4
436,976 - +0.0
437,016 + +0.6
437,018 + -0.0
437,071 - DVU0389 0.15 +0.5
437,116 + DVU0389 0.21 +0.3
437,124 - DVU0389 0.23 -0.7
437,154 + DVU0389 0.27 +0.8
437,162 - DVU0389 0.28 +0.5
437,181 + DVU0389 0.31 +1.0
437,181 + DVU0389 0.31 +0.3
437,181 + DVU0389 0.31 -0.4
437,205 + DVU0389 0.35 +1.0
437,245 + DVU0389 0.40 +1.4
437,260 - DVU0389 0.43 +0.5
437,270 - DVU0389 0.44 +0.1
437,270 - DVU0389 0.44 +0.4
437,270 - DVU0389 0.44 -0.4
437,299 + DVU0389 0.48 +2.3
437,317 - DVU0389 0.51 +0.1
437,320 + DVU0389 0.52 +2.3
437,325 + DVU0389 0.52 +0.3
437,325 + DVU0389 0.52 +0.2
437,333 - DVU0389 0.53 -1.0
437,358 + DVU0389 0.57 +0.4
437,358 + DVU0389 0.57 +0.5
437,358 + DVU0389 0.57 +1.1
437,366 - DVU0389 0.58 +0.5
437,366 - DVU0389 0.58 +0.9
437,366 - DVU0389 0.58 +0.3
437,366 - DVU0389 0.58 +0.8
437,499 + DVU0389 0.78 +0.8
437,564 - DVU0389 0.88 +0.4
437,597 + +0.4
437,649 - -0.2
437,660 + +0.3
437,668 + -0.2
437,676 - -0.2
437,676 - -0.3
437,789 - +0.6
437,916 - glcD DVU0390 0.18 +0.5
437,919 + glcD DVU0390 0.18 -0.3
437,937 + glcD DVU0390 0.19 -0.0

Or see this region's nucleotide sequence