Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ilvH and DVU0362 are separated by 50 nucleotides DVU0362 and pabB overlap by 4 nucleotides pabB and pabA are separated by 538 nucleotides
DVU0361: ilvH - acetolactate synthase III, small subunit, putative (TIGR), at 411,087 to 411,410
ilvH
DVU0362: DVU0362 - conserved hypothetical protein (TIGR), at 411,461 to 412,240
DVU0362
DVU0363: pabB - para-aminobenzoate synthase, component I (TIGR), at 412,237 to 413,241
pabB
DVU0364: pabA - para-aminobenzoate/anthranilate synthase glutamine amidotransferase (TIGR), at 413,780 to 414,334
pabA
Position (kb) 412
413
414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 411.373 kb on + strand, within ilvH at 411.389 kb on - strand at 411.409 kb on + strand at 411.532 kb on - strand at 411.565 kb on - strand, within DVU0362 at 411.626 kb on - strand, within DVU0362 at 411.626 kb on - strand, within DVU0362 at 411.631 kb on - strand, within DVU0362 at 411.642 kb on + strand, within DVU0362 at 411.649 kb on - strand, within DVU0362 at 411.683 kb on - strand, within DVU0362 at 411.708 kb on - strand, within DVU0362 at 411.727 kb on - strand, within DVU0362 at 411.915 kb on + strand, within DVU0362 at 411.938 kb on + strand, within DVU0362 at 411.996 kb on - strand, within DVU0362 at 412.062 kb on - strand, within DVU0362 at 412.093 kb on - strand, within DVU0362 at 412.134 kb on + strand, within DVU0362 at 412.146 kb on + strand, within DVU0362 at 412.344 kb on + strand, within pabB at 412.360 kb on + strand, within pabB at 412.360 kb on + strand, within pabB at 412.368 kb on - strand, within pabB at 412.368 kb on - strand, within pabB at 412.485 kb on + strand, within pabB at 412.493 kb on - strand, within pabB at 412.503 kb on - strand, within pabB at 412.528 kb on - strand, within pabB at 412.590 kb on - strand, within pabB at 412.602 kb on + strand, within pabB at 412.664 kb on + strand, within pabB at 412.738 kb on + strand, within pabB at 412.738 kb on - strand, within pabB at 412.770 kb on + strand, within pabB at 412.778 kb on - strand, within pabB at 412.778 kb on - strand, within pabB at 412.787 kb on + strand, within pabB at 412.828 kb on + strand, within pabB at 412.834 kb on - strand, within pabB at 412.901 kb on - strand, within pabB at 412.980 kb on + strand, within pabB at 412.983 kb on - strand, within pabB at 412.996 kb on - strand, within pabB at 412.996 kb on - strand, within pabB at 413.002 kb on + strand, within pabB at 413.019 kb on + strand, within pabB at 413.027 kb on - strand, within pabB at 413.094 kb on - strand, within pabB at 413.097 kb on + strand, within pabB at 413.128 kb on + strand, within pabB at 413.205 kb on + strand at 413.264 kb on + strand at 413.268 kb on - strand at 413.306 kb on - strand at 413.430 kb on - strand at 413.523 kb on - strand at 413.531 kb on - strand at 413.549 kb on - strand at 413.570 kb on + strand at 413.577 kb on + strand at 413.578 kb on - strand at 413.578 kb on - strand at 413.587 kb on - strand at 413.641 kb on + strand at 413.680 kb on + strand at 413.709 kb on - strand at 413.719 kb on - strand at 413.755 kb on + strand at 413.796 kb on - strand at 413.811 kb on - strand at 413.858 kb on - strand, within pabA at 413.935 kb on + strand, within pabA at 413.964 kb on + strand, within pabA at 413.977 kb on - strand, within pabA at 413.990 kb on - strand, within pabA at 414.007 kb on - strand, within pabA at 414.012 kb on + strand, within pabA at 414.018 kb on + strand, within pabA at 414.020 kb on - strand, within pabA at 414.103 kb on + strand, within pabA at 414.149 kb on - strand, within pabA at 414.186 kb on - strand, within pabA at 414.224 kb on + strand, within pabA
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) remove 411,373 + ilvH DVU0361 0.88 +2.0 411,389 - -1.9 411,409 + +0.2 411,532 - +0.9 411,565 - DVU0362 0.13 +1.6 411,626 - DVU0362 0.21 +1.0 411,626 - DVU0362 0.21 +0.0 411,631 - DVU0362 0.22 +1.1 411,642 + DVU0362 0.23 +0.8 411,649 - DVU0362 0.24 +0.7 411,683 - DVU0362 0.28 +1.0 411,708 - DVU0362 0.32 +0.4 411,727 - DVU0362 0.34 +0.6 411,915 + DVU0362 0.58 +0.6 411,938 + DVU0362 0.61 +0.3 411,996 - DVU0362 0.69 +0.7 412,062 - DVU0362 0.77 +0.7 412,093 - DVU0362 0.81 +0.6 412,134 + DVU0362 0.86 +1.9 412,146 + DVU0362 0.88 -0.7 412,344 + pabB DVU0363 0.11 +0.0 412,360 + pabB DVU0363 0.12 +1.2 412,360 + pabB DVU0363 0.12 -0.4 412,368 - pabB DVU0363 0.13 -0.3 412,368 - pabB DVU0363 0.13 -1.0 412,485 + pabB DVU0363 0.25 +2.0 412,493 - pabB DVU0363 0.25 -0.4 412,503 - pabB DVU0363 0.26 -0.8 412,528 - pabB DVU0363 0.29 -0.9 412,590 - pabB DVU0363 0.35 -0.0 412,602 + pabB DVU0363 0.36 -0.4 412,664 + pabB DVU0363 0.42 -0.5 412,738 + pabB DVU0363 0.50 -0.5 412,738 - pabB DVU0363 0.50 -0.3 412,770 + pabB DVU0363 0.53 -0.9 412,778 - pabB DVU0363 0.54 -0.6 412,778 - pabB DVU0363 0.54 -0.3 412,787 + pabB DVU0363 0.55 +0.2 412,828 + pabB DVU0363 0.59 -0.4 412,834 - pabB DVU0363 0.59 +0.9 412,901 - pabB DVU0363 0.66 +0.2 412,980 + pabB DVU0363 0.74 +0.3 412,983 - pabB DVU0363 0.74 -1.6 412,996 - pabB DVU0363 0.76 -0.0 412,996 - pabB DVU0363 0.76 -0.1 413,002 + pabB DVU0363 0.76 -0.0 413,019 + pabB DVU0363 0.78 -0.8 413,027 - pabB DVU0363 0.79 -0.0 413,094 - pabB DVU0363 0.85 -1.7 413,097 + pabB DVU0363 0.86 +0.2 413,128 + pabB DVU0363 0.89 -1.0 413,205 + -0.1 413,264 + +0.2 413,268 - -0.5 413,306 - +1.2 413,430 - +0.3 413,523 - +0.5 413,531 - -0.3 413,549 - +0.1 413,570 + +1.2 413,577 + -0.1 413,578 - -0.4 413,578 - -0.4 413,587 - -0.4 413,641 + +1.1 413,680 + +0.1 413,709 - -0.5 413,719 - -0.8 413,755 + +0.3 413,796 - +0.2 413,811 - -0.9 413,858 - pabA DVU0364 0.14 -0.6 413,935 + pabA DVU0364 0.28 -1.1 413,964 + pabA DVU0364 0.33 -1.2 413,977 - pabA DVU0364 0.35 +0.4 413,990 - pabA DVU0364 0.38 -0.4 414,007 - pabA DVU0364 0.41 +0.0 414,012 + pabA DVU0364 0.42 -0.2 414,018 + pabA DVU0364 0.43 +1.6 414,020 - pabA DVU0364 0.43 -0.8 414,103 + pabA DVU0364 0.58 +0.3 414,149 - pabA DVU0364 0.66 -0.4 414,186 - pabA DVU0364 0.73 +0.3 414,224 + pabA DVU0364 0.80 +0.2
Or see this region's nucleotide sequence