Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0192 and DVU0193 overlap by 8 nucleotides DVU0193 and DVU0194 are separated by 16 nucleotides DVU0194 and DVU0195 overlap by 4 nucleotides DVU0195 and DORF26313 overlap by 8 nucleotides DORF26313 and DVU0196 are separated by 362 nucleotides
DVU0192: DVU0192 - adenine specific DNA methyltransferase, putative (TIGR), at 237,390 to 238,748
DVU0192
DVU0193: DVU0193 - hypothetical protein (TIGR), at 238,741 to 239,472
DVU0193
DVU0194: DVU0194 - terminase, large subunit, putative (TIGR), at 239,489 to 241,447
DVU0194
DVU0195: DVU0195 - hypothetical protein (TIGR), at 241,444 to 241,662
DVU0195
DORF26313: DORF26313 - no description, at 241,655 to 242,083
DORF26313
DVU0196: DVU0196 - hypothetical protein (TIGR), at 242,446 to 242,586
DVU0196
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.001 kb on + strand, within DVU0193 at 239.009 kb on - strand, within DVU0193 at 239.050 kb on + strand, within DVU0193 at 239.053 kb on - strand, within DVU0193 at 239.054 kb on - strand, within DVU0193 at 239.060 kb on + strand, within DVU0193 at 239.081 kb on + strand, within DVU0193 at 239.089 kb on - strand, within DVU0193 at 239.089 kb on - strand, within DVU0193 at 239.300 kb on + strand, within DVU0193 at 239.310 kb on + strand, within DVU0193 at 239.404 kb on + strand at 239.467 kb on + strand at 239.511 kb on + strand at 239.519 kb on - strand at 239.519 kb on - strand at 239.644 kb on + strand at 239.647 kb on - strand at 239.699 kb on - strand, within DVU0194 at 239.764 kb on - strand, within DVU0194 at 239.896 kb on + strand, within DVU0194 at 239.933 kb on - strand, within DVU0194 at 239.939 kb on - strand, within DVU0194 at 239.965 kb on + strand, within DVU0194 at 240.053 kb on - strand, within DVU0194 at 240.273 kb on - strand, within DVU0194 at 240.528 kb on - strand, within DVU0194 at 240.567 kb on + strand, within DVU0194 at 240.629 kb on + strand, within DVU0194 at 240.648 kb on + strand, within DVU0194 at 240.648 kb on + strand, within DVU0194 at 240.656 kb on - strand, within DVU0194 at 240.656 kb on - strand, within DVU0194 at 240.656 kb on - strand, within DVU0194 at 240.678 kb on + strand, within DVU0194 at 240.684 kb on + strand, within DVU0194 at 240.686 kb on - strand, within DVU0194 at 240.751 kb on + strand, within DVU0194 at 240.751 kb on + strand, within DVU0194 at 240.759 kb on - strand, within DVU0194 at 240.814 kb on - strand, within DVU0194 at 240.940 kb on - strand, within DVU0194 at 241.258 kb on + strand at 241.291 kb on + strand at 241.309 kb on - strand at 241.326 kb on + strand at 241.373 kb on - strand at 241.383 kb on - strand at 241.426 kb on - strand at 241.428 kb on + strand at 241.428 kb on + strand at 241.437 kb on - strand at 241.449 kb on - strand at 241.449 kb on - strand at 241.580 kb on + strand, within DVU0195 at 241.588 kb on - strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.612 kb on - strand, within DVU0195 at 241.726 kb on + strand, within DORF26313 at 241.726 kb on - strand, within DORF26313 at 241.783 kb on + strand, within DORF26313 at 241.976 kb on - strand, within DORF26313 at 242.031 kb on + strand, within DORF26313 at 242.034 kb on - strand, within DORF26313 at 242.050 kb on - strand at 242.075 kb on + strand at 242.077 kb on + strand at 242.077 kb on + strand at 242.140 kb on - strand at 242.162 kb on - strand at 242.181 kb on - strand at 242.206 kb on - strand at 242.206 kb on - strand at 242.330 kb on - strand at 242.347 kb on + strand at 242.347 kb on + strand at 242.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) remove 239,001 + DVU0193 0.36 +1.0 239,009 - DVU0193 0.37 -0.4 239,050 + DVU0193 0.42 -0.2 239,053 - DVU0193 0.43 -0.0 239,054 - DVU0193 0.43 -0.5 239,060 + DVU0193 0.44 -0.6 239,081 + DVU0193 0.46 +0.0 239,089 - DVU0193 0.48 +0.5 239,089 - DVU0193 0.48 -0.3 239,300 + DVU0193 0.76 -0.2 239,310 + DVU0193 0.78 -0.8 239,404 + -0.2 239,467 + -0.5 239,511 + -0.7 239,519 - -0.2 239,519 - +0.6 239,644 + -0.1 239,647 - +0.1 239,699 - DVU0194 0.11 +1.0 239,764 - DVU0194 0.14 -0.2 239,896 + DVU0194 0.21 -0.3 239,933 - DVU0194 0.23 -0.4 239,939 - DVU0194 0.23 -0.6 239,965 + DVU0194 0.24 +1.7 240,053 - DVU0194 0.29 +0.0 240,273 - DVU0194 0.40 -0.4 240,528 - DVU0194 0.53 -0.3 240,567 + DVU0194 0.55 -0.1 240,629 + DVU0194 0.58 -0.3 240,648 + DVU0194 0.59 +1.0 240,648 + DVU0194 0.59 -0.2 240,656 - DVU0194 0.60 -0.8 240,656 - DVU0194 0.60 -0.3 240,656 - DVU0194 0.60 +0.2 240,678 + DVU0194 0.61 +1.4 240,684 + DVU0194 0.61 +0.0 240,686 - DVU0194 0.61 -0.5 240,751 + DVU0194 0.64 -0.1 240,751 + DVU0194 0.64 -0.8 240,759 - DVU0194 0.65 -0.4 240,814 - DVU0194 0.68 -0.4 240,940 - DVU0194 0.74 +1.5 241,258 + -0.0 241,291 + +2.0 241,309 - -0.1 241,326 + -0.1 241,373 - -0.5 241,383 - -0.1 241,426 - -0.6 241,428 + +1.2 241,428 + -0.2 241,437 - -0.3 241,449 - -1.8 241,449 - +0.6 241,580 + DVU0195 0.62 -0.6 241,588 - DVU0195 0.66 -0.2 241,604 + DVU0195 0.73 +2.3 241,604 + DVU0195 0.73 +1.1 241,604 + DVU0195 0.73 -0.2 241,604 + DVU0195 0.73 +0.7 241,612 - DVU0195 0.77 -0.4 241,726 + DORF26313 0.17 -0.1 241,726 - DORF26313 0.17 -0.3 241,783 + DORF26313 0.30 -1.0 241,976 - DORF26313 0.75 -0.5 242,031 + DORF26313 0.88 +0.1 242,034 - DORF26313 0.88 +0.7 242,050 - -0.5 242,075 + -1.0 242,077 + -1.1 242,077 + -0.3 242,140 - -0.4 242,162 - -0.5 242,181 - -0.2 242,206 - -0.2 242,206 - -0.2 242,330 - -0.6 242,347 + -0.3 242,347 + -0.1 242,442 + +0.7
Or see this region's nucleotide sequence