Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt patB and phsB are separated by 577 nucleotides phsB and phsA are separated by 9 nucleotides
DVU0171: patB - hemolysin-related protein (TIGR), at 213,725 to 214,906
patB
DVU0172: phsB - thiosulfate reductase (phsB) (Shelley Haveman), at 215,484 to 216,485
phsB
DVU0173: phsA - thiosulfate reductase (Shelley Haveman), at 216,495 to 218,591
phsA
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.508 kb on - strand, within patB at 214.519 kb on + strand, within patB at 214.527 kb on - strand, within patB at 214.570 kb on - strand, within patB at 214.604 kb on + strand, within patB at 214.612 kb on - strand, within patB at 214.742 kb on + strand, within patB at 214.820 kb on + strand at 214.949 kb on + strand at 215.026 kb on + strand at 215.175 kb on - strand at 215.188 kb on + strand at 215.200 kb on + strand at 215.401 kb on + strand at 215.401 kb on + strand at 215.444 kb on + strand at 215.447 kb on + strand at 215.459 kb on + strand at 215.467 kb on - strand at 215.482 kb on + strand at 215.518 kb on - strand at 215.555 kb on + strand at 215.563 kb on - strand at 215.578 kb on + strand at 215.586 kb on - strand, within phsB at 215.627 kb on + strand, within phsB at 215.635 kb on - strand, within phsB at 215.674 kb on + strand, within phsB at 215.676 kb on + strand, within phsB at 215.747 kb on + strand, within phsB at 215.815 kb on - strand, within phsB at 215.822 kb on - strand, within phsB at 215.841 kb on - strand, within phsB at 215.879 kb on + strand, within phsB at 215.884 kb on - strand, within phsB at 215.887 kb on - strand, within phsB at 216.021 kb on + strand, within phsB at 216.021 kb on + strand, within phsB at 216.021 kb on + strand, within phsB at 216.031 kb on + strand, within phsB at 216.053 kb on + strand, within phsB at 216.053 kb on + strand, within phsB at 216.183 kb on + strand, within phsB at 216.280 kb on + strand, within phsB at 216.367 kb on - strand, within phsB at 216.405 kb on + strand at 216.405 kb on + strand at 216.417 kb on + strand at 216.434 kb on + strand at 216.434 kb on + strand at 216.442 kb on - strand at 216.461 kb on - strand at 216.516 kb on - strand at 216.569 kb on - strand at 216.569 kb on - strand at 216.591 kb on + strand at 216.689 kb on - strand at 216.691 kb on - strand at 216.703 kb on + strand at 216.740 kb on + strand, within phsA at 216.762 kb on + strand, within phsA at 216.775 kb on - strand, within phsA at 216.841 kb on + strand, within phsA at 216.855 kb on + strand, within phsA at 216.877 kb on - strand, within phsA at 216.943 kb on + strand, within phsA at 216.975 kb on - strand, within phsA at 216.990 kb on + strand, within phsA at 217.010 kb on - strand, within phsA at 217.116 kb on - strand, within phsA at 217.149 kb on + strand, within phsA at 217.275 kb on - strand, within phsA at 217.295 kb on - strand, within phsA at 217.430 kb on - strand, within phsA at 217.431 kb on - strand, within phsA at 217.452 kb on + strand, within phsA
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) remove 214,508 - patB DVU0171 0.66 -0.0 214,519 + patB DVU0171 0.67 +0.6 214,527 - patB DVU0171 0.68 -0.4 214,570 - patB DVU0171 0.71 +0.6 214,604 + patB DVU0171 0.74 -0.0 214,612 - patB DVU0171 0.75 -0.2 214,742 + patB DVU0171 0.86 +1.2 214,820 + +0.2 214,949 + -0.4 215,026 + +0.8 215,175 - -0.3 215,188 + -0.4 215,200 + -0.0 215,401 + -0.9 215,401 + +0.1 215,444 + -0.6 215,447 + -0.6 215,459 + -1.0 215,467 - +1.0 215,482 + -1.9 215,518 - -0.9 215,555 + -0.6 215,563 - -1.2 215,578 + -0.8 215,586 - phsB DVU0172 0.10 -0.4 215,627 + phsB DVU0172 0.14 -1.5 215,635 - phsB DVU0172 0.15 +0.9 215,674 + phsB DVU0172 0.19 -1.1 215,676 + phsB DVU0172 0.19 -1.1 215,747 + phsB DVU0172 0.26 -0.9 215,815 - phsB DVU0172 0.33 -0.9 215,822 - phsB DVU0172 0.34 -0.5 215,841 - phsB DVU0172 0.36 -0.9 215,879 + phsB DVU0172 0.39 -1.1 215,884 - phsB DVU0172 0.40 -0.6 215,887 - phsB DVU0172 0.40 -0.8 216,021 + phsB DVU0172 0.54 -0.8 216,021 + phsB DVU0172 0.54 -0.8 216,021 + phsB DVU0172 0.54 -1.3 216,031 + phsB DVU0172 0.55 -0.0 216,053 + phsB DVU0172 0.57 -0.7 216,053 + phsB DVU0172 0.57 -1.0 216,183 + phsB DVU0172 0.70 +0.1 216,280 + phsB DVU0172 0.79 -1.2 216,367 - phsB DVU0172 0.88 +0.4 216,405 + -0.4 216,405 + -0.2 216,417 + +1.2 216,434 + -0.8 216,434 + -0.8 216,442 - -0.9 216,461 - -0.6 216,516 - +2.6 216,569 - +0.3 216,569 - -0.7 216,591 + -0.9 216,689 - -0.9 216,691 - -1.5 216,703 + -1.0 216,740 + phsA DVU0173 0.12 -1.2 216,762 + phsA DVU0173 0.13 -0.6 216,775 - phsA DVU0173 0.13 -0.8 216,841 + phsA DVU0173 0.16 -1.2 216,855 + phsA DVU0173 0.17 -0.4 216,877 - phsA DVU0173 0.18 -0.7 216,943 + phsA DVU0173 0.21 -1.1 216,975 - phsA DVU0173 0.23 -0.3 216,990 + phsA DVU0173 0.24 -0.2 217,010 - phsA DVU0173 0.25 -0.7 217,116 - phsA DVU0173 0.30 -0.8 217,149 + phsA DVU0173 0.31 -1.0 217,275 - phsA DVU0173 0.37 -0.5 217,295 - phsA DVU0173 0.38 +0.1 217,430 - phsA DVU0173 0.45 -0.8 217,431 - phsA DVU0173 0.45 -0.4 217,452 + phsA DVU0173 0.46 -1.4
Or see this region's nucleotide sequence