Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0058 and DVU0059 overlap by 4 nucleotides DVU0059 and acrA are separated by 154 nucleotides
DVU0058: DVU0058 - efflux transporter, RND family, MFP subunit (TIGR), at 64,527 to 65,678
DVU0058
DVU0059: DVU0059 - AcrB/AcrD/AcrF family protein (TIGR), at 65,675 to 69,385
DVU0059
DVU0060: acrA - efflux transporter, RND family, MFP subunit (TIGR), at 69,540 to 70,724
acrA
Position (kb) 65
66
67
68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 64.675 kb on + strand, within DVU0058 at 64.675 kb on + strand, within DVU0058 at 64.675 kb on + strand, within DVU0058 at 64.683 kb on - strand, within DVU0058 at 64.689 kb on + strand, within DVU0058 at 64.702 kb on - strand, within DVU0058 at 64.743 kb on + strand, within DVU0058 at 64.819 kb on - strand, within DVU0058 at 64.860 kb on - strand, within DVU0058 at 64.884 kb on + strand, within DVU0058 at 64.907 kb on + strand, within DVU0058 at 64.915 kb on - strand, within DVU0058 at 64.917 kb on + strand, within DVU0058 at 64.925 kb on - strand, within DVU0058 at 64.952 kb on + strand, within DVU0058 at 64.999 kb on - strand, within DVU0058 at 65.050 kb on - strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.115 kb on + strand, within DVU0058 at 65.116 kb on - strand, within DVU0058 at 65.151 kb on - strand, within DVU0058 at 65.177 kb on + strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.218 kb on - strand, within DVU0058 at 65.235 kb on + strand, within DVU0058 at 65.246 kb on + strand, within DVU0058 at 65.255 kb on - strand, within DVU0058 at 65.257 kb on + strand, within DVU0058 at 65.461 kb on + strand, within DVU0058 at 65.469 kb on + strand, within DVU0058 at 65.540 kb on - strand, within DVU0058 at 65.589 kb on - strand at 65.594 kb on - strand at 65.621 kb on - strand at 65.744 kb on - strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.790 kb on - strand at 65.790 kb on - strand at 65.798 kb on - strand at 65.818 kb on + strand at 65.876 kb on - strand at 65.946 kb on - strand at 65.953 kb on + strand at 66.014 kb on - strand at 66.019 kb on + strand at 66.022 kb on - strand at 66.024 kb on + strand at 66.024 kb on + strand at 66.081 kb on + strand, within DVU0059 at 66.118 kb on + strand, within DVU0059 at 66.120 kb on + strand, within DVU0059 at 66.120 kb on + strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.167 kb on - strand, within DVU0059 at 66.230 kb on + strand, within DVU0059 at 66.241 kb on + strand, within DVU0059 at 66.243 kb on - strand, within DVU0059 at 66.297 kb on - strand, within DVU0059 at 66.351 kb on - strand, within DVU0059 at 66.437 kb on + strand, within DVU0059 at 66.445 kb on - strand, within DVU0059 at 66.445 kb on - strand, within DVU0059 at 66.471 kb on + strand, within DVU0059 at 66.479 kb on - strand, within DVU0059 at 66.515 kb on + strand, within DVU0059 at 66.621 kb on + strand, within DVU0059 at 66.747 kb on + strand, within DVU0059 at 66.784 kb on - strand, within DVU0059 at 66.796 kb on + strand, within DVU0059 at 66.883 kb on + strand, within DVU0059 at 67.000 kb on + strand, within DVU0059 at 67.022 kb on - strand, within DVU0059 at 67.048 kb on + strand, within DVU0059 at 67.112 kb on - strand, within DVU0059 at 67.191 kb on - strand, within DVU0059 at 67.253 kb on - strand, within DVU0059 at 67.283 kb on - strand, within DVU0059 at 67.284 kb on + strand, within DVU0059 at 67.296 kb on + strand, within DVU0059 at 67.366 kb on + strand, within DVU0059 at 67.366 kb on + strand, within DVU0059 at 67.366 kb on + strand, within DVU0059 at 67.366 kb on + strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.396 kb on + strand, within DVU0059 at 67.457 kb on + strand, within DVU0059 at 67.470 kb on + strand, within DVU0059 at 67.548 kb on + strand, within DVU0059 at 67.560 kb on + strand, within DVU0059 at 67.570 kb on + strand, within DVU0059 at 67.570 kb on + strand, within DVU0059 at 67.578 kb on - strand, within DVU0059 at 67.602 kb on - strand, within DVU0059 at 67.639 kb on + strand, within DVU0059 at 67.639 kb on + strand, within DVU0059 at 67.743 kb on + strand, within DVU0059 at 67.751 kb on - strand, within DVU0059 at 67.753 kb on + strand, within DVU0059 at 67.770 kb on - strand, within DVU0059 at 67.779 kb on + strand, within DVU0059 at 67.781 kb on + strand, within DVU0059 at 67.782 kb on - strand, within DVU0059 at 67.805 kb on - strand, within DVU0059 at 67.805 kb on - strand, within DVU0059 at 67.811 kb on - strand, within DVU0059 at 67.816 kb on + strand, within DVU0059 at 67.816 kb on + strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.912 kb on + strand, within DVU0059 at 67.918 kb on + strand, within DVU0059 at 67.936 kb on + strand, within DVU0059 at 67.983 kb on + strand, within DVU0059 at 67.996 kb on - strand, within DVU0059 at 68.073 kb on - strand, within DVU0059 at 68.122 kb on + strand, within DVU0059 at 68.130 kb on - strand, within DVU0059 at 68.154 kb on + strand, within DVU0059 at 68.191 kb on - strand, within DVU0059 at 68.233 kb on - strand, within DVU0059 at 68.249 kb on - strand, within DVU0059 at 68.288 kb on + strand, within DVU0059 at 68.313 kb on + strand, within DVU0059 at 68.377 kb on + strand, within DVU0059 at 68.401 kb on + strand, within DVU0059 at 68.435 kb on + strand, within DVU0059 at 68.463 kb on - strand, within DVU0059 at 68.473 kb on - strand, within DVU0059 at 68.492 kb on - strand, within DVU0059 at 68.642 kb on - strand, within DVU0059 at 68.658 kb on + strand, within DVU0059 at 68.666 kb on - strand, within DVU0059 at 68.677 kb on - strand, within DVU0059 at 68.703 kb on + strand, within DVU0059 at 68.781 kb on + strand, within DVU0059 at 68.781 kb on + strand, within DVU0059 at 68.781 kb on + strand, within DVU0059 at 68.781 kb on + strand, within DVU0059 at 68.789 kb on - strand, within DVU0059 at 68.789 kb on - strand, within DVU0059 at 68.797 kb on - strand, within DVU0059 at 68.831 kb on + strand, within DVU0059 at 68.850 kb on + strand, within DVU0059 at 68.881 kb on + strand, within DVU0059 at 68.889 kb on + strand, within DVU0059 at 68.916 kb on - strand, within DVU0059 at 68.942 kb on + strand, within DVU0059 at 69.149 kb on + strand at 69.167 kb on + strand at 69.211 kb on - strand at 69.253 kb on + strand at 69.261 kb on - strand at 69.266 kb on - strand at 69.275 kb on + strand at 69.282 kb on + strand at 69.282 kb on + strand at 69.283 kb on - strand at 69.285 kb on + strand at 69.290 kb on - strand at 69.290 kb on - strand at 69.292 kb on + strand at 69.374 kb on - strand at 69.399 kb on + strand at 69.595 kb on - strand at 69.617 kb on + strand at 69.625 kb on - strand at 69.647 kb on + strand at 69.673 kb on - strand, within acrA at 69.673 kb on - strand, within acrA at 69.701 kb on - strand, within acrA at 69.738 kb on + strand, within acrA at 69.787 kb on - strand, within acrA at 69.806 kb on - strand, within acrA at 69.850 kb on - strand, within acrA at 69.850 kb on - strand, within acrA at 69.863 kb on + strand, within acrA at 69.885 kb on + strand, within acrA at 69.958 kb on + strand, within acrA at 70.018 kb on - strand, within acrA at 70.020 kb on + strand, within acrA at 70.020 kb on + strand, within acrA at 70.028 kb on - strand, within acrA at 70.030 kb on + strand, within acrA at 70.204 kb on + strand, within acrA at 70.211 kb on + strand, within acrA at 70.214 kb on - strand, within acrA at 70.256 kb on - strand, within acrA at 70.302 kb on + strand, within acrA at 70.302 kb on + strand, within acrA at 70.310 kb on - strand, within acrA at 70.310 kb on - strand, within acrA at 70.310 kb on - strand, within acrA at 70.357 kb on + strand, within acrA
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) remove 64,675 + DVU0058 0.13 -0.7 64,675 + DVU0058 0.13 +0.1 64,675 + DVU0058 0.13 -0.7 64,683 - DVU0058 0.14 -0.0 64,689 + DVU0058 0.14 -0.5 64,702 - DVU0058 0.15 +0.1 64,743 + DVU0058 0.19 -0.9 64,819 - DVU0058 0.25 -1.2 64,860 - DVU0058 0.29 -1.1 64,884 + DVU0058 0.31 -0.6 64,907 + DVU0058 0.33 -0.7 64,915 - DVU0058 0.34 -0.9 64,917 + DVU0058 0.34 -0.6 64,925 - DVU0058 0.35 +1.1 64,952 + DVU0058 0.37 -0.9 64,999 - DVU0058 0.41 -1.1 65,050 - DVU0058 0.45 -0.9 65,073 + DVU0058 0.47 -0.8 65,073 + DVU0058 0.47 -0.6 65,073 + DVU0058 0.47 -1.0 65,115 + DVU0058 0.51 -0.3 65,116 - DVU0058 0.51 -0.7 65,151 - DVU0058 0.54 +1.8 65,177 + DVU0058 0.56 -0.9 65,185 - DVU0058 0.57 -1.0 65,185 - DVU0058 0.57 -0.6 65,185 - DVU0058 0.57 -0.9 65,210 + DVU0058 0.59 -1.5 65,210 + DVU0058 0.59 -1.2 65,210 + DVU0058 0.59 -0.7 65,210 + DVU0058 0.59 +3.6 65,218 - DVU0058 0.60 -0.1 65,235 + DVU0058 0.61 -1.0 65,246 + DVU0058 0.62 -0.6 65,255 - DVU0058 0.63 -1.2 65,257 + DVU0058 0.63 -0.9 65,461 + DVU0058 0.81 -0.9 65,469 + DVU0058 0.82 -0.4 65,540 - DVU0058 0.88 -0.2 65,589 - +0.0 65,594 - -0.7 65,621 - -0.9 65,744 - -1.0 65,782 + -2.5 65,782 + -0.2 65,782 + -0.4 65,782 + -0.8 65,790 - -1.1 65,790 - -0.6 65,798 - +0.7 65,818 + -0.7 65,876 - +0.3 65,946 - -1.3 65,953 + -1.1 66,014 - -0.9 66,019 + +2.6 66,022 - -0.9 66,024 + -1.0 66,024 + -1.2 66,081 + DVU0059 0.11 -1.9 66,118 + DVU0059 0.12 -0.1 66,120 + DVU0059 0.12 +0.3 66,120 + DVU0059 0.12 -0.7 66,128 - DVU0059 0.12 +1.4 66,128 - DVU0059 0.12 -0.9 66,128 - DVU0059 0.12 -0.8 66,167 - DVU0059 0.13 -1.0 66,230 + DVU0059 0.15 +1.3 66,241 + DVU0059 0.15 +0.4 66,243 - DVU0059 0.15 -0.3 66,297 - DVU0059 0.17 +1.4 66,351 - DVU0059 0.18 -1.0 66,437 + DVU0059 0.21 -0.8 66,445 - DVU0059 0.21 -0.9 66,445 - DVU0059 0.21 -0.8 66,471 + DVU0059 0.21 -0.7 66,479 - DVU0059 0.22 +0.1 66,515 + DVU0059 0.23 -0.8 66,621 + DVU0059 0.25 +0.2 66,747 + DVU0059 0.29 -0.9 66,784 - DVU0059 0.30 -1.7 66,796 + DVU0059 0.30 -0.3 66,883 + DVU0059 0.33 -1.4 67,000 + DVU0059 0.36 -0.3 67,022 - DVU0059 0.36 -1.2 67,048 + DVU0059 0.37 -0.7 67,112 - DVU0059 0.39 -0.9 67,191 - DVU0059 0.41 -0.8 67,253 - DVU0059 0.43 -1.1 67,283 - DVU0059 0.43 -0.9 67,284 + DVU0059 0.43 -0.7 67,296 + DVU0059 0.44 -0.2 67,366 + DVU0059 0.46 -2.3 67,366 + DVU0059 0.46 -0.7 67,366 + DVU0059 0.46 +0.6 67,366 + DVU0059 0.46 -1.0 67,374 - DVU0059 0.46 -1.0 67,374 - DVU0059 0.46 -1.0 67,374 - DVU0059 0.46 +0.5 67,374 - DVU0059 0.46 -1.0 67,374 - DVU0059 0.46 -0.3 67,396 + DVU0059 0.46 -0.1 67,457 + DVU0059 0.48 -0.7 67,470 + DVU0059 0.48 -0.9 67,548 + DVU0059 0.50 -0.9 67,560 + DVU0059 0.51 -0.8 67,570 + DVU0059 0.51 -0.6 67,570 + DVU0059 0.51 -0.8 67,578 - DVU0059 0.51 -1.0 67,602 - DVU0059 0.52 -0.7 67,639 + DVU0059 0.53 -1.6 67,639 + DVU0059 0.53 +0.4 67,743 + DVU0059 0.56 -0.8 67,751 - DVU0059 0.56 -2.3 67,753 + DVU0059 0.56 -2.0 67,770 - DVU0059 0.56 -1.5 67,779 + DVU0059 0.57 -2.3 67,781 + DVU0059 0.57 -1.0 67,782 - DVU0059 0.57 -0.1 67,805 - DVU0059 0.57 -0.9 67,805 - DVU0059 0.57 -0.3 67,811 - DVU0059 0.58 -0.4 67,816 + DVU0059 0.58 -1.0 67,816 + DVU0059 0.58 +1.0 67,824 - DVU0059 0.58 -0.3 67,824 - DVU0059 0.58 -1.2 67,824 - DVU0059 0.58 -1.1 67,824 - DVU0059 0.58 -0.3 67,824 - DVU0059 0.58 -0.2 67,824 - DVU0059 0.58 -0.1 67,912 + DVU0059 0.60 -1.3 67,918 + DVU0059 0.60 -1.0 67,936 + DVU0059 0.61 -0.5 67,983 + DVU0059 0.62 -0.5 67,996 - DVU0059 0.63 -0.2 68,073 - DVU0059 0.65 -2.0 68,122 + DVU0059 0.66 -1.3 68,130 - DVU0059 0.66 -1.2 68,154 + DVU0059 0.67 -0.3 68,191 - DVU0059 0.68 -0.7 68,233 - DVU0059 0.69 -0.9 68,249 - DVU0059 0.69 +2.6 68,288 + DVU0059 0.70 -0.7 68,313 + DVU0059 0.71 -0.8 68,377 + DVU0059 0.73 -1.3 68,401 + DVU0059 0.73 -1.9 68,435 + DVU0059 0.74 +0.4 68,463 - DVU0059 0.75 -1.0 68,473 - DVU0059 0.75 -0.6 68,492 - DVU0059 0.76 -0.4 68,642 - DVU0059 0.80 -0.4 68,658 + DVU0059 0.80 -0.5 68,666 - DVU0059 0.81 +0.4 68,677 - DVU0059 0.81 -1.1 68,703 + DVU0059 0.82 +0.6 68,781 + DVU0059 0.84 -0.8 68,781 + DVU0059 0.84 -0.7 68,781 + DVU0059 0.84 -1.0 68,781 + DVU0059 0.84 -1.6 68,789 - DVU0059 0.84 -0.6 68,789 - DVU0059 0.84 -0.7 68,797 - DVU0059 0.84 -0.3 68,831 + DVU0059 0.85 -0.8 68,850 + DVU0059 0.86 -0.6 68,881 + DVU0059 0.86 -1.9 68,889 + DVU0059 0.87 -1.1 68,916 - DVU0059 0.87 -0.7 68,942 + DVU0059 0.88 -0.3 69,149 + +1.6 69,167 + -1.3 69,211 - -0.8 69,253 + +0.5 69,261 - -0.5 69,266 - -0.2 69,275 + -0.2 69,282 + -0.8 69,282 + -0.8 69,283 - -0.9 69,285 + +1.0 69,290 - -0.6 69,290 - -1.7 69,292 + -1.0 69,374 - -1.2 69,399 + -0.2 69,595 - +0.0 69,617 + +0.0 69,625 - +2.0 69,647 + -0.2 69,673 - acrA DVU0060 0.11 +1.2 69,673 - acrA DVU0060 0.11 -0.1 69,701 - acrA DVU0060 0.14 -2.0 69,738 + acrA DVU0060 0.17 -0.3 69,787 - acrA DVU0060 0.21 -0.3 69,806 - acrA DVU0060 0.22 +0.3 69,850 - acrA DVU0060 0.26 -0.4 69,850 - acrA DVU0060 0.26 +0.1 69,863 + acrA DVU0060 0.27 +2.2 69,885 + acrA DVU0060 0.29 -0.1 69,958 + acrA DVU0060 0.35 +0.2 70,018 - acrA DVU0060 0.40 -0.4 70,020 + acrA DVU0060 0.41 -0.0 70,020 + acrA DVU0060 0.41 -0.1 70,028 - acrA DVU0060 0.41 +0.3 70,030 + acrA DVU0060 0.41 -0.7 70,204 + acrA DVU0060 0.56 -1.4 70,211 + acrA DVU0060 0.57 -0.0 70,214 - acrA DVU0060 0.57 +0.0 70,256 - acrA DVU0060 0.60 -0.2 70,302 + acrA DVU0060 0.64 -1.2 70,302 + acrA DVU0060 0.64 -0.8 70,310 - acrA DVU0060 0.65 +0.3 70,310 - acrA DVU0060 0.65 -0.8 70,310 - acrA DVU0060 0.65 +0.1 70,357 + acrA DVU0060 0.69 +0.1
Or see this region's nucleotide sequence